miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 5' -55 NC_005262.1 + 50414 0.65 0.753166
Target:  5'- cAGCGCCgcggaGCGCGA-GGGC-CGcgUGCa -3'
miRNA:   3'- uUCGCGGa----CGUGCUgCUCGaGUa-ACG- -5'
24074 5' -55 NC_005262.1 + 22485 0.65 0.753166
Target:  5'- gAAGCGCUgaagcugGCGCG-CGAGCggAUcGCg -3'
miRNA:   3'- -UUCGCGGa------CGUGCuGCUCGagUAaCG- -5'
24074 5' -55 NC_005262.1 + 34762 0.65 0.753166
Target:  5'- -cGUGCCgGCGCcgcuCGAGCUCg--GCg -3'
miRNA:   3'- uuCGCGGaCGUGcu--GCUCGAGuaaCG- -5'
24074 5' -55 NC_005262.1 + 13795 0.65 0.753166
Target:  5'- uGGGCGCCgGCGCGGCuucaucggcggGAGCgggCGccGCu -3'
miRNA:   3'- -UUCGCGGaCGUGCUG-----------CUCGa--GUaaCG- -5'
24074 5' -55 NC_005262.1 + 47713 0.65 0.753166
Target:  5'- -cGCGCC-GgGCGGCG-GCUCGccGCc -3'
miRNA:   3'- uuCGCGGaCgUGCUGCuCGAGUaaCG- -5'
24074 5' -55 NC_005262.1 + 15711 0.65 0.752123
Target:  5'- cAGCGCUaUGCGCucgacguGGCGcGCUCAUUcGCu -3'
miRNA:   3'- uUCGCGG-ACGUG-------CUGCuCGAGUAA-CG- -5'
24074 5' -55 NC_005262.1 + 11473 0.66 0.742684
Target:  5'- -cGCGCUcGCGCG-CGAGCaCAUggGCc -3'
miRNA:   3'- uuCGCGGaCGUGCuGCUCGaGUAa-CG- -5'
24074 5' -55 NC_005262.1 + 37749 0.66 0.742684
Target:  5'- -uGCGCCccUGCuugcgcgccGCGGCGAGCUgCuggGCg -3'
miRNA:   3'- uuCGCGG--ACG---------UGCUGCUCGA-GuaaCG- -5'
24074 5' -55 NC_005262.1 + 53910 0.66 0.742684
Target:  5'- -cGgGUCUGCGCGACGcGCUgAagcagGCg -3'
miRNA:   3'- uuCgCGGACGUGCUGCuCGAgUaa---CG- -5'
24074 5' -55 NC_005262.1 + 16319 0.66 0.742684
Target:  5'- cGGCGuUCUucaGCGCGucgguuuucgcuGCGAGCUCGUUcGCg -3'
miRNA:   3'- uUCGC-GGA---CGUGC------------UGCUCGAGUAA-CG- -5'
24074 5' -55 NC_005262.1 + 4158 0.66 0.74163
Target:  5'- uGGCGCCgugcaGUgaaagucgaauuuGCGAUGAuGCUCAgUGCg -3'
miRNA:   3'- uUCGCGGa----CG-------------UGCUGCU-CGAGUaACG- -5'
24074 5' -55 NC_005262.1 + 15715 0.66 0.732089
Target:  5'- -cGCGUCgGCGCcgGGCG-GCUCGUcGCg -3'
miRNA:   3'- uuCGCGGaCGUG--CUGCuCGAGUAaCG- -5'
24074 5' -55 NC_005262.1 + 62560 0.66 0.732089
Target:  5'- cAGCGCCgaaGCACuucgGACGGGUgcg-UGCg -3'
miRNA:   3'- uUCGCGGa--CGUG----CUGCUCGaguaACG- -5'
24074 5' -55 NC_005262.1 + 48070 0.66 0.721392
Target:  5'- -cGCaCCUGcCGCGACGAGC-CGcccgGCg -3'
miRNA:   3'- uuCGcGGAC-GUGCUGCUCGaGUaa--CG- -5'
24074 5' -55 NC_005262.1 + 36845 0.66 0.721392
Target:  5'- uGGUGCCgacGaCACGACGgcGGUUCAgaaUGCa -3'
miRNA:   3'- uUCGCGGa--C-GUGCUGC--UCGAGUa--ACG- -5'
24074 5' -55 NC_005262.1 + 28976 0.66 0.721392
Target:  5'- -uGCGCCUcgccuuccagcaGCACGGCGAgaaggaGCUCA--GCc -3'
miRNA:   3'- uuCGCGGA------------CGUGCUGCU------CGAGUaaCG- -5'
24074 5' -55 NC_005262.1 + 7129 0.66 0.721392
Target:  5'- uGAGgGCCUGUuCGAUGAaGCgagCcUUGCg -3'
miRNA:   3'- -UUCgCGGACGuGCUGCU-CGa--GuAACG- -5'
24074 5' -55 NC_005262.1 + 48935 0.66 0.721392
Target:  5'- -uGCGCUUGCcaucuCGaACGAGCUCGa--- -3'
miRNA:   3'- uuCGCGGACGu----GC-UGCUCGAGUaacg -5'
24074 5' -55 NC_005262.1 + 12432 0.66 0.721392
Target:  5'- cGGCGUCgcggacgGCGCGGugcCGAGCUgCAUgGCg -3'
miRNA:   3'- uUCGCGGa------CGUGCU---GCUCGA-GUAaCG- -5'
24074 5' -55 NC_005262.1 + 52386 0.66 0.710605
Target:  5'- cGGCgGCCcgGCGCGGCGcGGCUUcg-GCg -3'
miRNA:   3'- uUCG-CGGa-CGUGCUGC-UCGAGuaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.