miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24074 5' -55 NC_005262.1 + 52212 1.1 0.000835
Target:  5'- gAAGCGCCUGCACGACGAGCUCAUUGCg -3'
miRNA:   3'- -UUCGCGGACGUGCUGCUCGAGUAACG- -5'
24074 5' -55 NC_005262.1 + 46741 0.82 0.083437
Target:  5'- cGGCGCCgugcGCGCGACGAGCUCGcggagcUGCu -3'
miRNA:   3'- uUCGCGGa---CGUGCUGCUCGAGUa-----ACG- -5'
24074 5' -55 NC_005262.1 + 29046 0.76 0.221596
Target:  5'- cGGCGCCgGCACGACGcgcaccguguucGGCUCGaccUGCg -3'
miRNA:   3'- uUCGCGGaCGUGCUGC------------UCGAGUa--ACG- -5'
24074 5' -55 NC_005262.1 + 8574 0.74 0.273059
Target:  5'- uGAGCgcgGCCUGCGCGACGaAGCgacggCGguugUGCg -3'
miRNA:   3'- -UUCG---CGGACGUGCUGC-UCGa----GUa---ACG- -5'
24074 5' -55 NC_005262.1 + 33201 0.74 0.287339
Target:  5'- -uGCGCCgacGCaggACGACGAGCgccaCAUUGCc -3'
miRNA:   3'- uuCGCGGa--CG---UGCUGCUCGa---GUAACG- -5'
24074 5' -55 NC_005262.1 + 46164 0.73 0.317647
Target:  5'- --cUGCCUGCugcuCGGCGAGCUCGcgcUGCu -3'
miRNA:   3'- uucGCGGACGu---GCUGCUCGAGUa--ACG- -5'
24074 5' -55 NC_005262.1 + 38974 0.73 0.32559
Target:  5'- cGGCGCCgGcCGCGaucGCGAGCUCGcgcUUGCc -3'
miRNA:   3'- uUCGCGGaC-GUGC---UGCUCGAGU---AACG- -5'
24074 5' -55 NC_005262.1 + 4413 0.73 0.338604
Target:  5'- -cGCGCCUGCuGCG-CGAGCgccuggagcucggCGUUGCc -3'
miRNA:   3'- uuCGCGGACG-UGCuGCUCGa------------GUAACG- -5'
24074 5' -55 NC_005262.1 + 44173 0.72 0.367497
Target:  5'- gGAGCGCg---GCGGCGAGCUCAaUGCc -3'
miRNA:   3'- -UUCGCGgacgUGCUGCUCGAGUaACG- -5'
24074 5' -55 NC_005262.1 + 13462 0.72 0.367497
Target:  5'- cGGGCGCuucgucCUGCGCGGCGGGCgc--UGCg -3'
miRNA:   3'- -UUCGCG------GACGUGCUGCUCGaguaACG- -5'
24074 5' -55 NC_005262.1 + 34509 0.72 0.367497
Target:  5'- cGGCGCggaUGCGCuucACGAGCUCGUcGCg -3'
miRNA:   3'- uUCGCGg--ACGUGc--UGCUCGAGUAaCG- -5'
24074 5' -55 NC_005262.1 + 17619 0.72 0.376311
Target:  5'- gGAGCGCCaGCAgcGCGAGCUCGccgaGCa -3'
miRNA:   3'- -UUCGCGGaCGUgcUGCUCGAGUaa--CG- -5'
24074 5' -55 NC_005262.1 + 5089 0.72 0.376311
Target:  5'- cAGCGCCUcggGCAUGcCGccAGCUUGUUGCg -3'
miRNA:   3'- uUCGCGGA---CGUGCuGC--UCGAGUAACG- -5'
24074 5' -55 NC_005262.1 + 42253 0.71 0.412965
Target:  5'- cGAGCGCCgcgcucacUGCgGCGACGAGCggCAcggGCa -3'
miRNA:   3'- -UUCGCGG--------ACG-UGCUGCUCGa-GUaa-CG- -5'
24074 5' -55 NC_005262.1 + 17113 0.71 0.422467
Target:  5'- cGGCGCugaCUGCAuCGGCGGGCgUCggUGCc -3'
miRNA:   3'- uUCGCG---GACGU-GCUGCUCG-AGuaACG- -5'
24074 5' -55 NC_005262.1 + 9377 0.71 0.422467
Target:  5'- cGGCgGCCUGCGCcuccGCGAGCUugcgcacgaCGUUGCc -3'
miRNA:   3'- uUCG-CGGACGUGc---UGCUCGA---------GUAACG- -5'
24074 5' -55 NC_005262.1 + 20178 0.71 0.422467
Target:  5'- -uGCGCCggUGC-CGGCGAGCgUCAccUGCg -3'
miRNA:   3'- uuCGCGG--ACGuGCUGCUCG-AGUa-ACG- -5'
24074 5' -55 NC_005262.1 + 51689 0.71 0.432099
Target:  5'- -cGCGC--GCACGGCGGcGCUgAUUGCg -3'
miRNA:   3'- uuCGCGgaCGUGCUGCU-CGAgUAACG- -5'
24074 5' -55 NC_005262.1 + 40235 0.71 0.441858
Target:  5'- -uGCGCCcgcGCGCGGCGGGCgguuggUCAgucUGCg -3'
miRNA:   3'- uuCGCGGa--CGUGCUGCUCG------AGUa--ACG- -5'
24074 5' -55 NC_005262.1 + 27527 0.7 0.461744
Target:  5'- -cGUGCCcGCGCGcaccgacgaggGCGAGCUCAgccccgGCg -3'
miRNA:   3'- uuCGCGGaCGUGC-----------UGCUCGAGUaa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.