miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24075 3' -57.3 NC_005262.1 + 6636 0.66 0.638242
Target:  5'- cGAGggGUC-GCCGGGGAuGUCGaccgacacggcCGCg -3'
miRNA:   3'- -CUCuuCAGcCGGCUCCUcUAGC-----------GCGa -5'
24075 3' -57.3 NC_005262.1 + 52697 0.66 0.616701
Target:  5'- aGGAAGgccgcCGGCCGAcgccGGAcGAggcCGCGCUg -3'
miRNA:   3'- cUCUUCa----GCCGGCU----CCU-CUa--GCGCGA- -5'
24075 3' -57.3 NC_005262.1 + 5684 0.67 0.605945
Target:  5'- uGGGAGagGGCCGGagcGGAGGcaggUGCGCUu -3'
miRNA:   3'- cUCUUCagCCGGCU---CCUCUa---GCGCGA- -5'
24075 3' -57.3 NC_005262.1 + 63232 0.67 0.595211
Target:  5'- -uGAAG-CGGuuGGGcGAGcgGUCGCGCa -3'
miRNA:   3'- cuCUUCaGCCggCUC-CUC--UAGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 15586 0.67 0.584507
Target:  5'- uGGAGGcgcgCGcGCgCGAGGAGcgCGUGCg -3'
miRNA:   3'- cUCUUCa---GC-CG-GCUCCUCuaGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 4871 0.67 0.583438
Target:  5'- cGAGAagcgcgcgccaucGGUCgGGCCGccGGccuGAUCGCGCa -3'
miRNA:   3'- -CUCU-------------UCAG-CCGGCu-CCu--CUAGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 12848 0.67 0.573841
Target:  5'- cGGGAAccGUCGuGCCGAGcu--UCGCGCUg -3'
miRNA:   3'- -CUCUU--CAGC-CGGCUCcucuAGCGCGA- -5'
24075 3' -57.3 NC_005262.1 + 61421 0.68 0.521341
Target:  5'- -cGAAGgcggCGGCCGAGGAauuccacGUCGCGa- -3'
miRNA:   3'- cuCUUCa---GCCGGCUCCUc------UAGCGCga -5'
24075 3' -57.3 NC_005262.1 + 15813 0.68 0.494775
Target:  5'- gGGGAAGcUCGGCa-GGGAGAggcgcgagaggucguUCGCGCc -3'
miRNA:   3'- -CUCUUC-AGCCGgcUCCUCU---------------AGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 60206 0.69 0.441717
Target:  5'- aAGGAGcCGGCCGGcGAGGUCG-GCa -3'
miRNA:   3'- cUCUUCaGCCGGCUcCUCUAGCgCGa -5'
24075 3' -57.3 NC_005262.1 + 27502 0.7 0.422895
Target:  5'- -cGAAGUCGaCCGAGGuGuUCGCGUc -3'
miRNA:   3'- cuCUUCAGCcGGCUCCuCuAGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 50241 0.7 0.417342
Target:  5'- aAGguGUCGGCCGAGaucgaccgccgcaacGAGggCGCGCc -3'
miRNA:   3'- cUCuuCAGCCGGCUC---------------CUCuaGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 63403 0.7 0.411835
Target:  5'- aGAGgcGUCGgagaaggcccgcaaaGCCGAGGcaaccaugcgcgagaAGGUCGCGCa -3'
miRNA:   3'- -CUCuuCAGC---------------CGGCUCC---------------UCUAGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 30861 0.71 0.378024
Target:  5'- cGGGAuGaCGGCCGAGGAG-UCGCcgaGCg -3'
miRNA:   3'- -CUCUuCaGCCGGCUCCUCuAGCG---CGa -5'
24075 3' -57.3 NC_005262.1 + 17613 0.71 0.352681
Target:  5'- -uGAAGugcgugaucgccUCGGCCGucgcgucGGAGAUCGCGUUg -3'
miRNA:   3'- cuCUUC------------AGCCGGCu------CCUCUAGCGCGA- -5'
24075 3' -57.3 NC_005262.1 + 29201 0.72 0.320802
Target:  5'- uGGAGGUCaucggcaagauGCCGccGGAGAUCGCGCUg -3'
miRNA:   3'- cUCUUCAGc----------CGGCu-CCUCUAGCGCGA- -5'
24075 3' -57.3 NC_005262.1 + 4145 0.72 0.291129
Target:  5'- cGGGuuGUCGGCgaccagcgCGAGGAGAgacuggCGCGCg -3'
miRNA:   3'- -CUCuuCAGCCG--------GCUCCUCUa-----GCGCGa -5'
24075 3' -57.3 NC_005262.1 + 25725 0.73 0.284055
Target:  5'- -cGAugcaGGCCGAGGcGAUCGCGCa -3'
miRNA:   3'- cuCUucagCCGGCUCCuCUAGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 57487 0.73 0.253261
Target:  5'- cGAGAAGcCGGCCGAcGAGGcgccgaaguucagcgUCGCGCc -3'
miRNA:   3'- -CUCUUCaGCCGGCUcCUCU---------------AGCGCGa -5'
24075 3' -57.3 NC_005262.1 + 17247 0.75 0.188726
Target:  5'- -----cUCGGCCGAGGAGA-CGCGCc -3'
miRNA:   3'- cucuucAGCCGGCUCCUCUaGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.