miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24075 5' -55.1 NC_005262.1 + 23445 0.66 0.780578
Target:  5'- -cGACGAUCGAcaucagcgcgccGGCCgUG--AGCCGAu -3'
miRNA:   3'- cuUUGCUAGCU------------CCGGgACagUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 5303 0.66 0.780578
Target:  5'- --cGCGGUCGAGGCg--GUCggagcuGGCCGGc -3'
miRNA:   3'- cuuUGCUAGCUCCGggaCAG------UCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 53661 0.66 0.769615
Target:  5'- aAGGCGAUCGccaaccugcccgaGGGCaUCUaUCAGCCGGg -3'
miRNA:   3'- cUUUGCUAGC-------------UCCG-GGAcAGUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 42149 0.66 0.760519
Target:  5'- --cGCGG-CGccGGGCCCgGUCgcGGCCGAu -3'
miRNA:   3'- cuuUGCUaGC--UCCGGGaCAG--UCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 59929 0.66 0.739941
Target:  5'- --cGCGA-CGAGGgaCUGUCGGCCu- -3'
miRNA:   3'- cuuUGCUaGCUCCggGACAGUCGGcu -5'
24075 5' -55.1 NC_005262.1 + 30735 0.66 0.727383
Target:  5'- cGAGAgGGUCGAgGGCCCgcuuaguacgacGUCGGgCGGu -3'
miRNA:   3'- -CUUUgCUAGCU-CCGGGa-----------CAGUCgGCU- -5'
24075 5' -55.1 NC_005262.1 + 12665 0.67 0.708299
Target:  5'- -cGGCG-UCGAGcGCCUUGUCGaCCGGc -3'
miRNA:   3'- cuUUGCuAGCUC-CGGGACAGUcGGCU- -5'
24075 5' -55.1 NC_005262.1 + 63403 0.67 0.69759
Target:  5'- aGAGGCG-UCGgagaAGGCCCgcaaAGCCGAg -3'
miRNA:   3'- -CUUUGCuAGC----UCCGGGacagUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 52505 0.67 0.69759
Target:  5'- cAGGCGAUCaacauGGCCgagaaGUCGGCCGAg -3'
miRNA:   3'- cUUUGCUAGcu---CCGGga---CAGUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 40906 0.67 0.686817
Target:  5'- --cGCGAUCGAGgaucguGCUCUGcCGGCuCGAa -3'
miRNA:   3'- cuuUGCUAGCUC------CGGGACaGUCG-GCU- -5'
24075 5' -55.1 NC_005262.1 + 10704 0.67 0.686817
Target:  5'- ----aGAUCGAGGCCgCgcgcacgCGGCCGGc -3'
miRNA:   3'- cuuugCUAGCUCCGG-Gaca----GUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 5885 0.67 0.675994
Target:  5'- uGAAGCGAUCGAcGUCgaUGUCGGgCGGg -3'
miRNA:   3'- -CUUUGCUAGCUcCGGg-ACAGUCgGCU- -5'
24075 5' -55.1 NC_005262.1 + 41107 0.68 0.654234
Target:  5'- cGAGGCGGUCGAGGCgC-GUCuGCg-- -3'
miRNA:   3'- -CUUUGCUAGCUCCGgGaCAGuCGgcu -5'
24075 5' -55.1 NC_005262.1 + 21342 0.68 0.621469
Target:  5'- gGAGGCGAUCGAGGCggCCaa--GGCCGc -3'
miRNA:   3'- -CUUUGCUAGCUCCG--GGacagUCGGCu -5'
24075 5' -55.1 NC_005262.1 + 45696 0.68 0.621469
Target:  5'- --uGCGcAUCGAGGgCCgg-CAGCCGGc -3'
miRNA:   3'- cuuUGC-UAGCUCCgGGacaGUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 54469 0.7 0.545742
Target:  5'- -cAACG-UCGAGGCgCUGcucgcggugCAGCCGAa -3'
miRNA:   3'- cuUUGCuAGCUCCGgGACa--------GUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 33591 0.7 0.524591
Target:  5'- --cACGAUCGAGGCCaccgCAGUCGc -3'
miRNA:   3'- cuuUGCUAGCUCCGGgacaGUCGGCu -5'
24075 5' -55.1 NC_005262.1 + 55150 0.7 0.509973
Target:  5'- cGAGACGAccauUCGAGGCCauccaaacaAGCCGAu -3'
miRNA:   3'- -CUUUGCU----AGCUCCGGgacag----UCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 57136 0.7 0.493478
Target:  5'- -cGGCGAguacaUCGcGGCCgUGUCGGUCGAc -3'
miRNA:   3'- cuUUGCU-----AGCuCCGGgACAGUCGGCU- -5'
24075 5' -55.1 NC_005262.1 + 19935 0.7 0.493478
Target:  5'- --cGCGAUcgcgcCGAGGUCCUGcCGGCCa- -3'
miRNA:   3'- cuuUGCUA-----GCUCCGGGACaGUCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.