miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 10979 0.67 0.453675
Target:  5'- aGCCGCUcGCCgagCGCCuGCCacUGCGAAUc -3'
miRNA:   3'- -CGGCGA-UGGa--GCGGcUGGc-GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 4943 0.67 0.453675
Target:  5'- cGCCgGCgugACgUCGCCGAuCUGCGUGccgaAGCg -3'
miRNA:   3'- -CGG-CGa--UGgAGCGGCU-GGCGCGC----UUG- -5'
24076 5' -59.6 NC_005262.1 + 51252 0.67 0.482497
Target:  5'- cGCCGCgACCU-GCCG-CCGCaacauggagGCGAucGCg -3'
miRNA:   3'- -CGGCGaUGGAgCGGCuGGCG---------CGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 41182 0.67 0.470859
Target:  5'- cGCCGCgaucgcgugcgcGCC-CGgCGACCGCuuCGAGCa -3'
miRNA:   3'- -CGGCGa-----------UGGaGCgGCUGGCGc-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 24212 0.67 0.482497
Target:  5'- aGCCGCgacGCUgCGCCGGCaCGC-CGAu- -3'
miRNA:   3'- -CGGCGa--UGGaGCGGCUG-GCGcGCUug -5'
24076 5' -59.6 NC_005262.1 + 54436 0.67 0.482497
Target:  5'- gGCCGCcGCgCgCGCCGACCGgaaguaucaGCGcAACg -3'
miRNA:   3'- -CGGCGaUG-GaGCGGCUGGCg--------CGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 22150 0.67 0.4923
Target:  5'- cGCgGCUGCCcgcaUCGCCGAgCUGgagGCGAAg -3'
miRNA:   3'- -CGgCGAUGG----AGCGGCU-GGCg--CGCUUg -5'
24076 5' -59.6 NC_005262.1 + 32861 0.67 0.4923
Target:  5'- cCCGCacgUGCggCGCCGagcuguucGCCGCGuCGAACg -3'
miRNA:   3'- cGGCG---AUGgaGCGGC--------UGGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 11448 0.67 0.4923
Target:  5'- cGCCGCgcCCgcgcaucgUGCCuACCGCGCucGCg -3'
miRNA:   3'- -CGGCGauGGa-------GCGGcUGGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 43610 0.67 0.4923
Target:  5'- aUCGCgcaggugACgCUCGCCGGCaccgGCGCaGAACu -3'
miRNA:   3'- cGGCGa------UG-GAGCGGCUGg---CGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 12954 0.67 0.4923
Target:  5'- -gCGCgacgGCaUCGCCGACCGCucgGCGucGACg -3'
miRNA:   3'- cgGCGa---UGgAGCGGCUGGCG---CGC--UUG- -5'
24076 5' -59.6 NC_005262.1 + 26986 0.67 0.502194
Target:  5'- aUCGCUcacGCC-CGCCGAgCGCGCc-GCa -3'
miRNA:   3'- cGGCGA---UGGaGCGGCUgGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 15289 0.67 0.46318
Target:  5'- -aUGCUGCCagUCGUCGauucGCCGCGCauGGGCg -3'
miRNA:   3'- cgGCGAUGG--AGCGGC----UGGCGCG--CUUG- -5'
24076 5' -59.6 NC_005262.1 + 54105 0.67 0.502194
Target:  5'- cGCUGCUgcGCCUcgaCGUCGACgGCGCc--- -3'
miRNA:   3'- -CGGCGA--UGGA---GCGGCUGgCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 20399 0.67 0.502194
Target:  5'- cGCCGUUGagCUCGCCG-CCGaUGCucGCa -3'
miRNA:   3'- -CGGCGAUg-GAGCGGCuGGC-GCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 59235 0.67 0.4923
Target:  5'- cGCCGCUGgCgcgagaugCGCCG--CGCGCGcACg -3'
miRNA:   3'- -CGGCGAUgGa-------GCGGCugGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 34360 0.67 0.4923
Target:  5'- uGCCGCaGCCUUGCgGGCCuuCGCcugcugcuccucGAGCg -3'
miRNA:   3'- -CGGCGaUGGAGCGgCUGGc-GCG------------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 23388 0.67 0.4923
Target:  5'- gGUCGCcgACgCgcgGCUGAauCCGCGCGAACg -3'
miRNA:   3'- -CGGCGa-UG-Gag-CGGCU--GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 42371 0.67 0.4923
Target:  5'- aGCuCGCgga--CGUCGGCCGuCGCGAGCu -3'
miRNA:   3'- -CG-GCGauggaGCGGCUGGC-GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 29844 0.67 0.450844
Target:  5'- cGCCGCguuccgggaucgcuUGCCgcgUGCCcGCCGCGagcuCGAGCa -3'
miRNA:   3'- -CGGCG--------------AUGGa--GCGGcUGGCGC----GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.