miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 30958 0.68 0.444277
Target:  5'- gGCCGaaACCuugUCGCCGACguCGC-CGGACa -3'
miRNA:   3'- -CGGCgaUGG---AGCGGCUG--GCGcGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 28444 0.68 0.415856
Target:  5'- cGCCGUgcucGCCgugUCGCCGAugaugcgcaugcaCUGCGCGAu- -3'
miRNA:   3'- -CGGCGa---UGG---AGCGGCU-------------GGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 49215 0.68 0.407816
Target:  5'- gGCCGagggcgGCCUCGgCGGCgcgcaguccgCGCGCGAGg -3'
miRNA:   3'- -CGGCga----UGGAGCgGCUG----------GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 10778 0.68 0.398997
Target:  5'- cCCGC-GCCgggCGCgCGguacuGCUGCGCGAGCu -3'
miRNA:   3'- cGGCGaUGGa--GCG-GC-----UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49358 0.68 0.398997
Target:  5'- cGCuCGCUGacgaCUCGgCGACgCGCGCGuuCa -3'
miRNA:   3'- -CG-GCGAUg---GAGCgGCUG-GCGCGCuuG- -5'
24076 5' -59.6 NC_005262.1 + 51151 0.68 0.398997
Target:  5'- cGCCGUgaagAagUCGCCGAgCGCGC-AGCa -3'
miRNA:   3'- -CGGCGa---UggAGCGGCUgGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 31483 0.68 0.398997
Target:  5'- uCCGCcgACCUCGCCGucgacguCCGCaaGAAg -3'
miRNA:   3'- cGGCGa-UGGAGCGGCu------GGCGcgCUUg -5'
24076 5' -59.6 NC_005262.1 + 28178 0.68 0.444277
Target:  5'- uGCCGUUGCCggacgacugCaacgccaucuguGCCGAgcCCGCGcCGAGCa -3'
miRNA:   3'- -CGGCGAUGGa--------G------------CGGCU--GGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 10187 0.68 0.416755
Target:  5'- uCCGUUACCU-GCCGAgCGgcgacgcgguUGCGAACa -3'
miRNA:   3'- cGGCGAUGGAgCGGCUgGC----------GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 17918 0.68 0.416755
Target:  5'- aGCCGCcgAUCggCGCCGA-CGCcaacgGCGAGCa -3'
miRNA:   3'- -CGGCGa-UGGa-GCGGCUgGCG-----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 11024 0.68 0.425814
Target:  5'- gGCgGCUGUCgCGCaaGACCGCGCGcAGCa -3'
miRNA:   3'- -CGgCGAUGGaGCGg-CUGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 28539 0.68 0.448023
Target:  5'- aCCGCUACCcguucaCGCCuaucuggggcuuccGCCGCGCGcGCg -3'
miRNA:   3'- cGGCGAUGGa-----GCGGc-------------UGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 60454 0.68 0.444277
Target:  5'- aGCCGCgGCCUCGUC-AUCaGCGacaaGAGCa -3'
miRNA:   3'- -CGGCGaUGGAGCGGcUGG-CGCg---CUUG- -5'
24076 5' -59.6 NC_005262.1 + 22234 0.68 0.434989
Target:  5'- gGCCGCgccGCCcaCGCCGGCCG-GCcuGCg -3'
miRNA:   3'- -CGGCGa--UGGa-GCGGCUGGCgCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 46825 0.68 0.425814
Target:  5'- cCCGC-GCgCUCGCCGAgaaaagCGCGcCGAGCg -3'
miRNA:   3'- cGGCGaUG-GAGCGGCUg-----GCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 48563 0.68 0.425814
Target:  5'- gGCCGCUACaaggUGCuCGAcCCGaacgaaGCGAGCc -3'
miRNA:   3'- -CGGCGAUGga--GCG-GCU-GGCg-----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6339 0.68 0.434989
Target:  5'- cGCCGCUugUagUCGCggcagagcuCGAacaCGCGCGGAUu -3'
miRNA:   3'- -CGGCGAugG--AGCG---------GCUg--GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 61393 0.68 0.425814
Target:  5'- aGCCGCUACUaCGaCCu-CgCGCGCGAGg -3'
miRNA:   3'- -CGGCGAUGGaGC-GGcuG-GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 32686 0.68 0.425814
Target:  5'- -gCGCUGCCggcCGCCGGCCuccagGUGGGCg -3'
miRNA:   3'- cgGCGAUGGa--GCGGCUGGcg---CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50355 0.68 0.443343
Target:  5'- cCCGCgacgACCgcgagcggcgcauUCGUCGACCGUggcgacGCGAACc -3'
miRNA:   3'- cGGCGa---UGG-------------AGCGGCUGGCG------CGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.