Results 101 - 120 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 17918 | 0.68 | 0.416755 |
Target: 5'- aGCCGCcgAUCggCGCCGA-CGCcaacgGCGAGCa -3' miRNA: 3'- -CGGCGa-UGGa-GCGGCUgGCG-----CGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 48563 | 0.68 | 0.425814 |
Target: 5'- gGCCGCUACaaggUGCuCGAcCCGaacgaaGCGAGCc -3' miRNA: 3'- -CGGCGAUGga--GCG-GCU-GGCg-----CGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 61393 | 0.68 | 0.425814 |
Target: 5'- aGCCGCUACUaCGaCCu-CgCGCGCGAGg -3' miRNA: 3'- -CGGCGAUGGaGC-GGcuG-GCGCGCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 32686 | 0.68 | 0.425814 |
Target: 5'- -gCGCUGCCggcCGCCGGCCuccagGUGGGCg -3' miRNA: 3'- cgGCGAUGGa--GCGGCUGGcg---CGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 11024 | 0.68 | 0.425814 |
Target: 5'- gGCgGCUGUCgCGCaaGACCGCGCGcAGCa -3' miRNA: 3'- -CGgCGAUGGaGCGg-CUGGCGCGC-UUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 10187 | 0.68 | 0.416755 |
Target: 5'- uCCGUUACCU-GCCGAgCGgcgacgcgguUGCGAACa -3' miRNA: 3'- cGGCGAUGGAgCGGCUgGC----------GCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 28444 | 0.68 | 0.415856 |
Target: 5'- cGCCGUgcucGCCgugUCGCCGAugaugcgcaugcaCUGCGCGAu- -3' miRNA: 3'- -CGGCGa---UGG---AGCGGCU-------------GGCGCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 49215 | 0.68 | 0.407816 |
Target: 5'- gGCCGagggcgGCCUCGgCGGCgcgcaguccgCGCGCGAGg -3' miRNA: 3'- -CGGCga----UGGAGCgGCUG----------GCGCGCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 10778 | 0.68 | 0.398997 |
Target: 5'- cCCGC-GCCgggCGCgCGguacuGCUGCGCGAGCu -3' miRNA: 3'- cGGCGaUGGa--GCG-GC-----UGGCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 51151 | 0.68 | 0.398997 |
Target: 5'- cGCCGUgaagAagUCGCCGAgCGCGC-AGCa -3' miRNA: 3'- -CGGCGa---UggAGCGGCUgGCGCGcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 22234 | 0.68 | 0.434989 |
Target: 5'- gGCCGCgccGCCcaCGCCGGCCG-GCcuGCg -3' miRNA: 3'- -CGGCGa--UGGa-GCGGCUGGCgCGcuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 49358 | 0.68 | 0.398997 |
Target: 5'- cGCuCGCUGacgaCUCGgCGACgCGCGCGuuCa -3' miRNA: 3'- -CG-GCGAUg---GAGCgGCUG-GCGCGCuuG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 50355 | 0.68 | 0.443343 |
Target: 5'- cCCGCgacgACCgcgagcggcgcauUCGUCGACCGUggcgacGCGAACc -3' miRNA: 3'- cGGCGa---UGG-------------AGCGGCUGGCG------CGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 31483 | 0.68 | 0.398997 |
Target: 5'- uCCGCcgACCUCGCCGucgacguCCGCaaGAAg -3' miRNA: 3'- cGGCGa-UGGAGCGGCu------GGCGcgCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 46825 | 0.68 | 0.425814 |
Target: 5'- cCCGC-GCgCUCGCCGAgaaaagCGCGcCGAGCg -3' miRNA: 3'- cGGCGaUG-GAGCGGCUg-----GCGC-GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 25226 | 0.69 | 0.390301 |
Target: 5'- -gUGCUGCCcuucCGcCCGaACCGCGCGcAACg -3' miRNA: 3'- cgGCGAUGGa---GC-GGC-UGGCGCGC-UUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 43860 | 0.69 | 0.38173 |
Target: 5'- cGCCgGCaggACCUCgGCgCGAUCGCGCGcAUg -3' miRNA: 3'- -CGG-CGa--UGGAG-CG-GCUGGCGCGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6865 | 0.69 | 0.38173 |
Target: 5'- gGCCGUaguCCUCggcgauGCCGGCCGCGaucgcguuuuCGAGCc -3' miRNA: 3'- -CGGCGau-GGAG------CGGCUGGCGC----------GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 35926 | 0.69 | 0.38173 |
Target: 5'- gGCCuCgACUUUGCCuACCGUGUGAACg -3' miRNA: 3'- -CGGcGaUGGAGCGGcUGGCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 3670 | 0.69 | 0.38173 |
Target: 5'- cUCGCgGCCgUCGCUGGCCGUGaCGAc- -3' miRNA: 3'- cGGCGaUGG-AGCGGCUGGCGC-GCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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