miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 39060 0.7 0.303132
Target:  5'- gGCCGCa----CGCCGAUCGCGCGcGCc -3'
miRNA:   3'- -CGGCGauggaGCGGCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 29306 0.7 0.303132
Target:  5'- aGUCGCg----CGCCG-CCGCGCGGAUg -3'
miRNA:   3'- -CGGCGauggaGCGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 55216 0.7 0.340795
Target:  5'- cGCCGUcGCUUCGUCGcgcagGCCGCGCucAACa -3'
miRNA:   3'- -CGGCGaUGGAGCGGC-----UGGCGCGc-UUG- -5'
24076 5' -59.6 NC_005262.1 + 5029 0.7 0.332999
Target:  5'- aGCgGCagUugCUCGCCGGCCgGCGCcugaucggcGGGCa -3'
miRNA:   3'- -CGgCG--AugGAGCGGCUGG-CGCG---------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 6516 0.7 0.332999
Target:  5'- aGCgCGCcgACCUCGCCGuCaCGCucGCGGAUc -3'
miRNA:   3'- -CG-GCGa-UGGAGCGGCuG-GCG--CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 51508 0.7 0.340009
Target:  5'- -aCGUUGCCgagaaagcucggcUCGCCGGCCGCGaucGACa -3'
miRNA:   3'- cgGCGAUGG-------------AGCGGCUGGCGCgc-UUG- -5'
24076 5' -59.6 NC_005262.1 + 13741 0.7 0.339225
Target:  5'- cGCCGUgccaggcauucaGCCUCGCgGGuCUGCGUGAAUc -3'
miRNA:   3'- -CGGCGa-----------UGGAGCGgCU-GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6229 0.7 0.340795
Target:  5'- cGCCGagaUGCUgaaGCCcGCCGCGCGcACg -3'
miRNA:   3'- -CGGCg--AUGGag-CGGcUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 3590 0.7 0.332999
Target:  5'- uGCCG--ACCUCGCCGGCCG-GCu--- -3'
miRNA:   3'- -CGGCgaUGGAGCGGCUGGCgCGcuug -5'
24076 5' -59.6 NC_005262.1 + 35926 0.69 0.38173
Target:  5'- gGCCuCgACUUUGCCuACCGUGUGAACg -3'
miRNA:   3'- -CGGcGaUGGAGCGGcUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 41968 0.69 0.348722
Target:  5'- uGCCGC-GCCUguUGCCugacaccGCCGCGCaGAACg -3'
miRNA:   3'- -CGGCGaUGGA--GCGGc------UGGCGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 44551 0.69 0.348722
Target:  5'- uGCCGUUccuguUCUCGCCGGCCGauaCGCaGGCa -3'
miRNA:   3'- -CGGCGAu----GGAGCGGCUGGC---GCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 25226 0.69 0.390301
Target:  5'- -gUGCUGCCcuucCGcCCGaACCGCGCGcAACg -3'
miRNA:   3'- cgGCGAUGGa---GC-GGC-UGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 52702 0.69 0.35678
Target:  5'- gGCCGCcgGCCgaCGCCGgacgagGCCGCGCugcuGACg -3'
miRNA:   3'- -CGGCGa-UGGa-GCGGC------UGGCGCGc---UUG- -5'
24076 5' -59.6 NC_005262.1 + 21872 0.69 0.364968
Target:  5'- cGgCGCUGaa--GCCGACCGCGCagccGGACg -3'
miRNA:   3'- -CgGCGAUggagCGGCUGGCGCG----CUUG- -5'
24076 5' -59.6 NC_005262.1 + 51414 0.69 0.35678
Target:  5'- aCCGCgugCUCGgCGGCgCGCGCGAGg -3'
miRNA:   3'- cGGCGaugGAGCgGCUG-GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 43860 0.69 0.38173
Target:  5'- cGCCgGCaggACCUCgGCgCGAUCGCGCGcAUg -3'
miRNA:   3'- -CGG-CGa--UGGAG-CG-GCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 43475 0.69 0.364968
Target:  5'- aGCCGCU-UCguggCGgCGACCGUcuacGCGGACg -3'
miRNA:   3'- -CGGCGAuGGa---GCgGCUGGCG----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 16553 0.69 0.373285
Target:  5'- aGCCGCU-CC-CGUucaCGGCCGCGgaugcCGAGCa -3'
miRNA:   3'- -CGGCGAuGGaGCG---GCUGGCGC-----GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6865 0.69 0.38173
Target:  5'- gGCCGUaguCCUCggcgauGCCGGCCGCGaucgcguuuuCGAGCc -3'
miRNA:   3'- -CGGCGau-GGAG------CGGCUGGCGC----------GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.