miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 15306 0.72 0.225998
Target:  5'- uGCgGCUGCCgucgCGCCGcCCGUGCccACg -3'
miRNA:   3'- -CGgCGAUGGa---GCGGCuGGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 48076 0.72 0.225998
Target:  5'- uGCCGCgacgaGCCgcccggCGCCGA-CGCGCGAu- -3'
miRNA:   3'- -CGGCGa----UGGa-----GCGGCUgGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 42568 0.72 0.225998
Target:  5'- aGCCGCUucCCUCGCuCGaauggaacgcGCCGC-CGGACg -3'
miRNA:   3'- -CGGCGAu-GGAGCG-GC----------UGGCGcGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 17258 0.72 0.225998
Target:  5'- aGCgGCgGCCggCGCCGcgcugggcuGCUGCGCGGGCa -3'
miRNA:   3'- -CGgCGaUGGa-GCGGC---------UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 27672 0.72 0.231733
Target:  5'- cGgUGCUcGCCUCGCCGuAUCGCGC-AGCg -3'
miRNA:   3'- -CgGCGA-UGGAGCGGC-UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 16968 0.72 0.237591
Target:  5'- gGCgCGCUuuUCUCGgCGAgCGCGCGGGCc -3'
miRNA:   3'- -CG-GCGAu-GGAGCgGCUgGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 2386 0.72 0.243572
Target:  5'- gGCCGCcGCCuUCGCCu-CgCGCGCGAGg -3'
miRNA:   3'- -CGGCGaUGG-AGCGGcuG-GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 21523 0.72 0.243572
Target:  5'- cGCCGgUGCCcgUGCCGcucgucGCCGCaGUGAGCg -3'
miRNA:   3'- -CGGCgAUGGa-GCGGC------UGGCG-CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 12104 0.72 0.243572
Target:  5'- gGgCGCaAUCagcgcCGCCGugCGCGCGAGCa -3'
miRNA:   3'- -CgGCGaUGGa----GCGGCugGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 20295 0.72 0.249678
Target:  5'- gGuuGCgaccGCCUUGCCGuCCGCGUaGACg -3'
miRNA:   3'- -CggCGa---UGGAGCGGCuGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 10339 0.72 0.255909
Target:  5'- cGCCGUUGuCCUcgaCGCCGgcGCCGCGCuucuggagGAACa -3'
miRNA:   3'- -CGGCGAU-GGA---GCGGC--UGGCGCG--------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 16989 0.71 0.262268
Target:  5'- cCUGCUGCCgccgGCCGAgCGCGCGcuCg -3'
miRNA:   3'- cGGCGAUGGag--CGGCUgGCGCGCuuG- -5'
24076 5' -59.6 NC_005262.1 + 35144 0.71 0.262268
Target:  5'- uGUCGCUGCauacCGCCGAuCCGgGCGAc- -3'
miRNA:   3'- -CGGCGAUGga--GCGGCU-GGCgCGCUug -5'
24076 5' -59.6 NC_005262.1 + 46442 0.71 0.262268
Target:  5'- cGCCGCgccGCCcgCGCCGgacccgaauGCCGCGCcGGCc -3'
miRNA:   3'- -CGGCGa--UGGa-GCGGC---------UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 52944 0.71 0.262268
Target:  5'- cGCCGCcuggGCUUCGCCGGCgGCaaggugcuCGAGCc -3'
miRNA:   3'- -CGGCGa---UGGAGCGGCUGgCGc-------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6722 0.71 0.268754
Target:  5'- aGCCGCcgAUCUCGCCGAuCUGCucgGCGGu- -3'
miRNA:   3'- -CGGCGa-UGGAGCGGCU-GGCG---CGCUug -5'
24076 5' -59.6 NC_005262.1 + 13829 0.71 0.268754
Target:  5'- cGCCGCUGUCUCGUCGGCgaucgGCuCGAACg -3'
miRNA:   3'- -CGGCGAUGGAGCGGCUGg----CGcGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 12579 0.71 0.268754
Target:  5'- aGCUGCUGCUgcCGCCGGCgaggCGuCGCGGAUg -3'
miRNA:   3'- -CGGCGAUGGa-GCGGCUG----GC-GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 4855 0.71 0.268754
Target:  5'- aCUGCUGCg-CGCCGACCGagaaGCGcGCg -3'
miRNA:   3'- cGGCGAUGgaGCGGCUGGCg---CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 11412 0.71 0.275369
Target:  5'- aGCCGC-GCCgCGCCgGGCCGC-CGAAg -3'
miRNA:   3'- -CGGCGaUGGaGCGG-CUGGCGcGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.