miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 11412 0.71 0.275369
Target:  5'- aGCCGC-GCCgCGCCgGGCCGC-CGAAg -3'
miRNA:   3'- -CGGCGaUGGaGCGG-CUGGCGcGCUUg -5'
24076 5' -59.6 NC_005262.1 + 30756 0.71 0.281434
Target:  5'- gGCCGCcgaucgugaugccUACCUCGCC--UCGCGCGGc- -3'
miRNA:   3'- -CGGCG-------------AUGGAGCGGcuGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 2940 0.71 0.282114
Target:  5'- cGCCGCgcauUGCCUcggccaucgccaCGCCGAUCGCGUaGGCc -3'
miRNA:   3'- -CGGCG----AUGGA------------GCGGCUGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 7177 0.71 0.282114
Target:  5'- uGCCGCUACCgCGUaauuGCgGCGCGAuuGCa -3'
miRNA:   3'- -CGGCGAUGGaGCGgc--UGgCGCGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 50586 0.71 0.282114
Target:  5'- cCCGCUGCCgcucaacCCGGuaGCGCGAGCg -3'
miRNA:   3'- cGGCGAUGGagc----GGCUggCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 16616 0.71 0.282114
Target:  5'- aGCCGCguuucgaGCUgggcgauaUCGUCGuGCUGCGCGAGCa -3'
miRNA:   3'- -CGGCGa------UGG--------AGCGGC-UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49782 0.71 0.284163
Target:  5'- gGCCGCUGCCgCGCCggacgccccugcaccGuccggcccgaucgGCCGCGCGAu- -3'
miRNA:   3'- -CGGCGAUGGaGCGG---------------C-------------UGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 41452 0.71 0.288295
Target:  5'- cGCgGCUACCguuaCGCUGACCGCagcccagaugccgGCGcACa -3'
miRNA:   3'- -CGgCGAUGGa---GCGGCUGGCG-------------CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 18490 0.71 0.288989
Target:  5'- cGCCGUUguaGCCUUgGCCGACgaugccgacguuCGCGCGGAa -3'
miRNA:   3'- -CGGCGA---UGGAG-CGGCUG------------GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 48396 0.71 0.288989
Target:  5'- aCCGC-GCCUCGCUGAagCGCgGCGAAa -3'
miRNA:   3'- cGGCGaUGGAGCGGCUg-GCG-CGCUUg -5'
24076 5' -59.6 NC_005262.1 + 50320 0.71 0.288989
Target:  5'- aGCCG--GCCgcagCGCCcGCCGCGCaGGACg -3'
miRNA:   3'- -CGGCgaUGGa---GCGGcUGGCGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 6298 0.71 0.288989
Target:  5'- cGCCGCcuucuUGCgCUCGCCGGCCGCcucuCGucGGCg -3'
miRNA:   3'- -CGGCG-----AUG-GAGCGGCUGGCGc---GC--UUG- -5'
24076 5' -59.6 NC_005262.1 + 43290 0.71 0.295995
Target:  5'- cGUCGCgagcGCCgCGCCGAUggugCGCGCGAuuACg -3'
miRNA:   3'- -CGGCGa---UGGaGCGGCUG----GCGCGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 32731 0.71 0.295995
Target:  5'- gGCgUGCUGCCg-GCCGACCacucCGUGAGCg -3'
miRNA:   3'- -CG-GCGAUGGagCGGCUGGc---GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 34151 0.71 0.295995
Target:  5'- -aCGuCUACC-CGCCGGCCGuCGCcGGCa -3'
miRNA:   3'- cgGC-GAUGGaGCGGCUGGC-GCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 29306 0.7 0.303132
Target:  5'- aGUCGCg----CGCCG-CCGCGCGGAUg -3'
miRNA:   3'- -CGGCGauggaGCGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 39060 0.7 0.303132
Target:  5'- gGCCGCa----CGCCGAUCGCGCGcGCc -3'
miRNA:   3'- -CGGCGauggaGCGGCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 232 0.7 0.313345
Target:  5'- -aCGCUACC--GCCGGCggcggcgggacauuuCGCGCGGACg -3'
miRNA:   3'- cgGCGAUGGagCGGCUG---------------GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 11955 0.7 0.325334
Target:  5'- cGCCGCgcuucagcACUUCGCgacguCGGCCGCGCuGAAg -3'
miRNA:   3'- -CGGCGa-------UGGAGCG-----GCUGGCGCG-CUUg -5'
24076 5' -59.6 NC_005262.1 + 3303 0.7 0.332226
Target:  5'- cGCCGCgcgGCCcggcgucUCGCCcuGAUCGCGC-AGCg -3'
miRNA:   3'- -CGGCGa--UGG-------AGCGG--CUGGCGCGcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.