Results 81 - 100 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 6516 | 0.7 | 0.332999 |
Target: 5'- aGCgCGCcgACCUCGCCGuCaCGCucGCGGAUc -3' miRNA: 3'- -CG-GCGa-UGGAGCGGCuG-GCG--CGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 3590 | 0.7 | 0.332999 |
Target: 5'- uGCCG--ACCUCGCCGGCCG-GCu--- -3' miRNA: 3'- -CGGCgaUGGAGCGGCUGGCgCGcuug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 5029 | 0.7 | 0.332999 |
Target: 5'- aGCgGCagUugCUCGCCGGCCgGCGCcugaucggcGGGCa -3' miRNA: 3'- -CGgCG--AugGAGCGGCUGG-CGCG---------CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 13741 | 0.7 | 0.339225 |
Target: 5'- cGCCGUgccaggcauucaGCCUCGCgGGuCUGCGUGAAUc -3' miRNA: 3'- -CGGCGa-----------UGGAGCGgCU-GGCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 51508 | 0.7 | 0.340009 |
Target: 5'- -aCGUUGCCgagaaagcucggcUCGCCGGCCGCGaucGACa -3' miRNA: 3'- cgGCGAUGG-------------AGCGGCUGGCGCgc-UUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 49992 | 0.7 | 0.340795 |
Target: 5'- cCCGCU-CC-CGCCGaugaaGCCGCGCcGGCg -3' miRNA: 3'- cGGCGAuGGaGCGGC-----UGGCGCGcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 55216 | 0.7 | 0.340795 |
Target: 5'- cGCCGUcGCUUCGUCGcgcagGCCGCGCucAACa -3' miRNA: 3'- -CGGCGaUGGAGCGGC-----UGGCGCGc-UUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6229 | 0.7 | 0.340795 |
Target: 5'- cGCCGagaUGCUgaaGCCcGCCGCGCGcACg -3' miRNA: 3'- -CGGCg--AUGGag-CGGcUGGCGCGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 11569 | 0.7 | 0.340795 |
Target: 5'- cGCgCGCUGCUaUGCCGGCgGCGgccagcgcuCGAGCg -3' miRNA: 3'- -CG-GCGAUGGaGCGGCUGgCGC---------GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 46635 | 0.69 | 0.34633 |
Target: 5'- cGCgCGCgGCCUUGCCGGCCuucucgauugcgacGCGCGc-- -3' miRNA: 3'- -CG-GCGaUGGAGCGGCUGG--------------CGCGCuug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 12668 | 0.69 | 0.348722 |
Target: 5'- cGUCGagcGCCUUGUCGACCgGCGCGucgAGCa -3' miRNA: 3'- -CGGCga-UGGAGCGGCUGG-CGCGC---UUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 41968 | 0.69 | 0.348722 |
Target: 5'- uGCCGC-GCCUguUGCCugacaccGCCGCGCaGAACg -3' miRNA: 3'- -CGGCGaUGGA--GCGGc------UGGCGCG-CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 44551 | 0.69 | 0.348722 |
Target: 5'- uGCCGUUccuguUCUCGCCGGCCGauaCGCaGGCa -3' miRNA: 3'- -CGGCGAu----GGAGCGGCUGGC---GCGcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 51512 | 0.69 | 0.348722 |
Target: 5'- gGCCGCaACggCGagaCGACCGUGCGcAACa -3' miRNA: 3'- -CGGCGaUGgaGCg--GCUGGCGCGC-UUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 16647 | 0.69 | 0.348722 |
Target: 5'- -gCGC-GCCUCGCCGGUCGCGuCGAc- -3' miRNA: 3'- cgGCGaUGGAGCGGCUGGCGC-GCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 40090 | 0.69 | 0.354349 |
Target: 5'- cGCCGCguggucgACCgugCGCCGguagacccacacgcGCCGCuCGGGCg -3' miRNA: 3'- -CGGCGa------UGGa--GCGGC--------------UGGCGcGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 1110 | 0.69 | 0.35678 |
Target: 5'- cGUCGCgcuccCCUgcCGCCG-CCGgGCGGACu -3' miRNA: 3'- -CGGCGau---GGA--GCGGCuGGCgCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 48463 | 0.69 | 0.35678 |
Target: 5'- uGCCGCgcggaUCGCgaGCCGCGUGGGCa -3' miRNA: 3'- -CGGCGaugg-AGCGgcUGGCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 51414 | 0.69 | 0.35678 |
Target: 5'- aCCGCgugCUCGgCGGCgCGCGCGAGg -3' miRNA: 3'- cGGCGaugGAGCgGCUG-GCGCGCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 52702 | 0.69 | 0.35678 |
Target: 5'- gGCCGCcgGCCgaCGCCGgacgagGCCGCGCugcuGACg -3' miRNA: 3'- -CGGCGa-UGGa-GCGGC------UGGCGCGc---UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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