miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 51414 0.69 0.35678
Target:  5'- aCCGCgugCUCGgCGGCgCGCGCGAGg -3'
miRNA:   3'- cGGCGaugGAGCgGCUG-GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 43475 0.69 0.364968
Target:  5'- aGCCGCU-UCguggCGgCGACCGUcuacGCGGACg -3'
miRNA:   3'- -CGGCGAuGGa---GCgGCUGGCG----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 30106 0.69 0.364968
Target:  5'- gGCCGggACCUUGCCGaauuugGCCGUGUacGCg -3'
miRNA:   3'- -CGGCgaUGGAGCGGC------UGGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 21872 0.69 0.364968
Target:  5'- cGgCGCUGaa--GCCGACCGCGCagccGGACg -3'
miRNA:   3'- -CgGCGAUggagCGGCUGGCGCG----CUUG- -5'
24076 5' -59.6 NC_005262.1 + 11808 0.69 0.369943
Target:  5'- uGCCGCUguucaguugcgaACCggacaguuucgagCGCaGGCgCGCGCGAGCg -3'
miRNA:   3'- -CGGCGA------------UGGa------------GCGgCUG-GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 5311 0.69 0.370777
Target:  5'- cGCCGCUACCagauggaucgUGCCGuccgacgucgugacGCCGCGCa--- -3'
miRNA:   3'- -CGGCGAUGGa---------GCGGC--------------UGGCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 12618 0.69 0.373285
Target:  5'- gGCCGCcGCgUCGUCGGCUGCcugcuGCGcGCu -3'
miRNA:   3'- -CGGCGaUGgAGCGGCUGGCG-----CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 14556 0.69 0.373285
Target:  5'- gGUCGCggACCUCGCgcgcgGACUGCGCGc-- -3'
miRNA:   3'- -CGGCGa-UGGAGCGg----CUGGCGCGCuug -5'
24076 5' -59.6 NC_005262.1 + 16553 0.69 0.373285
Target:  5'- aGCCGCU-CC-CGUucaCGGCCGCGgaugcCGAGCa -3'
miRNA:   3'- -CGGCGAuGGaGCG---GCUGGCGC-----GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 43860 0.69 0.38173
Target:  5'- cGCCgGCaggACCUCgGCgCGAUCGCGCGcAUg -3'
miRNA:   3'- -CGG-CGa--UGGAG-CG-GCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 6865 0.69 0.38173
Target:  5'- gGCCGUaguCCUCggcgauGCCGGCCGCGaucgcguuuuCGAGCc -3'
miRNA:   3'- -CGGCGau-GGAG------CGGCUGGCGC----------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 35926 0.69 0.38173
Target:  5'- gGCCuCgACUUUGCCuACCGUGUGAACg -3'
miRNA:   3'- -CGGcGaUGGAGCGGcUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 41664 0.69 0.38173
Target:  5'- aGCCGCggcgGCCagacgaUUGCCGGCCaCGUGcAGCa -3'
miRNA:   3'- -CGGCGa---UGG------AGCGGCUGGcGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 16491 0.69 0.38173
Target:  5'- cGCCaGCUucagcuuuGCCUCGCCGAucuUCGcCGCGGc- -3'
miRNA:   3'- -CGG-CGA--------UGGAGCGGCU---GGC-GCGCUug -5'
24076 5' -59.6 NC_005262.1 + 3670 0.69 0.38173
Target:  5'- cUCGCgGCCgUCGCUGGCCGUGaCGAc- -3'
miRNA:   3'- cGGCGaUGG-AGCGGCUGGCGC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 49285 0.69 0.38173
Target:  5'- uGCUGUUGCCgaUCGCCuuguaGCGCGGACc -3'
miRNA:   3'- -CGGCGAUGG--AGCGGcugg-CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 2627 0.69 0.389438
Target:  5'- cGCCGCgcGCCcgucagcUCGCCcGCCGcCGCGAu- -3'
miRNA:   3'- -CGGCGa-UGG-------AGCGGcUGGC-GCGCUug -5'
24076 5' -59.6 NC_005262.1 + 25226 0.69 0.390301
Target:  5'- -gUGCUGCCcuucCGcCCGaACCGCGCGcAACg -3'
miRNA:   3'- cgGCGAUGGa---GC-GGC-UGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 6515 0.69 0.390301
Target:  5'- uCUGCUGCaCgcggGCCGugaGCUGCGCGAGCu -3'
miRNA:   3'- cGGCGAUG-Gag--CGGC---UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 47198 0.69 0.390301
Target:  5'- cGCgGCUGCUUCGCCGccucgaccagcACaCGCGCcuGCu -3'
miRNA:   3'- -CGgCGAUGGAGCGGC-----------UG-GCGCGcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.