miRNA display CGI


Results 61 - 80 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 31101 0.67 0.482497
Target:  5'- uGUCGCccaccuggagGCCggcgGCCGGCaGCGCGAACu -3'
miRNA:   3'- -CGGCGa---------UGGag--CGGCUGgCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 61643 0.67 0.482497
Target:  5'- aGCCGC-GCUgaugCGCUGACCGaugcacaaCGCaGAACg -3'
miRNA:   3'- -CGGCGaUGGa---GCGGCUGGC--------GCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 24212 0.67 0.482497
Target:  5'- aGCCGCgacGCUgCGCCGGCaCGC-CGAu- -3'
miRNA:   3'- -CGGCGa--UGGaGCGGCUG-GCGcGCUug -5'
24076 5' -59.6 NC_005262.1 + 54436 0.67 0.482497
Target:  5'- gGCCGCcGCgCgCGCCGACCGgaaguaucaGCGcAACg -3'
miRNA:   3'- -CGGCGaUG-GaGCGGCUGGCg--------CGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 7186 0.67 0.472789
Target:  5'- cGuaGCUGCCcuUCGUCGcccaCGCGCGGAUg -3'
miRNA:   3'- -CggCGAUGG--AGCGGCug--GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 1049 0.67 0.472789
Target:  5'- uGCCgaauGCUGCggCGCUGACCGCcaGCGcGCc -3'
miRNA:   3'- -CGG----CGAUGgaGCGGCUGGCG--CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 53318 0.67 0.472789
Target:  5'- cGCUGCUGCUggUCGCCGcugUCGuCGCGGc- -3'
miRNA:   3'- -CGGCGAUGG--AGCGGCu--GGC-GCGCUug -5'
24076 5' -59.6 NC_005262.1 + 41182 0.67 0.470859
Target:  5'- cGCCGCgaucgcgugcgcGCC-CGgCGACCGCuuCGAGCa -3'
miRNA:   3'- -CGGCGa-----------UGGaGCgGCUGGCGc-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 58711 0.67 0.46318
Target:  5'- gGCgGCaUGCCcgaggCGCUGACCGCG-GAGg -3'
miRNA:   3'- -CGgCG-AUGGa----GCGGCUGGCGCgCUUg -5'
24076 5' -59.6 NC_005262.1 + 19884 0.67 0.46318
Target:  5'- gGCCGCgguuggcGCCgCGCUGACCGCcuuCGAc- -3'
miRNA:   3'- -CGGCGa------UGGaGCGGCUGGCGc--GCUug -5'
24076 5' -59.6 NC_005262.1 + 23430 0.67 0.46318
Target:  5'- gGCCGUcgACgUCGCCGACgaucgacaucagCGCGCcGGCc -3'
miRNA:   3'- -CGGCGa-UGgAGCGGCUG------------GCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 22118 0.67 0.46318
Target:  5'- uGCCGaUGCCggUGCCGGCgGCGauGACg -3'
miRNA:   3'- -CGGCgAUGGa-GCGGCUGgCGCgcUUG- -5'
24076 5' -59.6 NC_005262.1 + 15289 0.67 0.46318
Target:  5'- -aUGCUGCCagUCGUCGauucGCCGCGCauGGGCg -3'
miRNA:   3'- cgGCGAUGG--AGCGGC----UGGCGCG--CUUG- -5'
24076 5' -59.6 NC_005262.1 + 53236 0.67 0.46318
Target:  5'- uGCaCGaCUACUucuUCGCCaagaccaucGACCGCGUGAAa -3'
miRNA:   3'- -CG-GC-GAUGG---AGCGG---------CUGGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 58615 0.67 0.462225
Target:  5'- gGCCGCgcccgcGCCcgcgaCGCCGGCCgucaccgaucagcGCGcCGAGCa -3'
miRNA:   3'- -CGGCGa-----UGGa----GCGGCUGG-------------CGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 28808 0.67 0.457464
Target:  5'- cGCUGCUGCCcggcugccuggagcuUCgacuugcgGCCGagcGCCGCGuCGAACu -3'
miRNA:   3'- -CGGCGAUGG---------------AG--------CGGC---UGGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 10979 0.67 0.453675
Target:  5'- aGCCGCUcGCCgagCGCCuGCCacUGCGAAUc -3'
miRNA:   3'- -CGGCGA-UGGa--GCGGcUGGc-GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 4943 0.67 0.453675
Target:  5'- cGCCgGCgugACgUCGCCGAuCUGCGUGccgaAGCg -3'
miRNA:   3'- -CGG-CGa--UGgAGCGGCU-GGCGCGC----UUG- -5'
24076 5' -59.6 NC_005262.1 + 30626 0.67 0.453675
Target:  5'- aGCCGCcGCCgaCGCuCGGcaaggugcCCGCGuCGGACa -3'
miRNA:   3'- -CGGCGaUGGa-GCG-GCU--------GGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 29844 0.67 0.450844
Target:  5'- cGCCGCguuccgggaucgcuUGCCgcgUGCCcGCCGCGagcuCGAGCa -3'
miRNA:   3'- -CGGCG--------------AUGGa--GCGGcUGGCGC----GCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.