miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 14080 0.66 0.512175
Target:  5'- gGCCGCcGgUUCGCCGcccggcacGCCGuCGCGGu- -3'
miRNA:   3'- -CGGCGaUgGAGCGGC--------UGGC-GCGCUug -5'
24076 5' -59.6 NC_005262.1 + 14145 0.75 0.165297
Target:  5'- uGCCGCcGCCUugcaggcCGCCGAUCGCGaggccacCGAGCg -3'
miRNA:   3'- -CGGCGaUGGA-------GCGGCUGGCGC-------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 14255 0.66 0.552848
Target:  5'- -aCGCaGCgUCGCCGgagacggaagugGCaaaGCGCGAACu -3'
miRNA:   3'- cgGCGaUGgAGCGGC------------UGg--CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 14556 0.69 0.373285
Target:  5'- gGUCGCggACCUCGCgcgcgGACUGCGCGc-- -3'
miRNA:   3'- -CGGCGa-UGGAGCGg----CUGGCGCGCuug -5'
24076 5' -59.6 NC_005262.1 + 14592 0.68 0.407816
Target:  5'- gGCCGCccucggccagcaUGCCggagaucaUCGCCGugCGCGCcgcuGCg -3'
miRNA:   3'- -CGGCG------------AUGG--------AGCGGCugGCGCGcu--UG- -5'
24076 5' -59.6 NC_005262.1 + 15289 0.67 0.46318
Target:  5'- -aUGCUGCCagUCGUCGauucGCCGCGCauGGGCg -3'
miRNA:   3'- cgGCGAUGG--AGCGGC----UGGCGCG--CUUG- -5'
24076 5' -59.6 NC_005262.1 + 15306 0.72 0.225998
Target:  5'- uGCgGCUGCCgucgCGCCGcCCGUGCccACg -3'
miRNA:   3'- -CGgCGAUGGa---GCGGCuGGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 16052 0.66 0.552848
Target:  5'- cGCCGCUACCgCGacuugCGGCCGaCGauccugaugaCGAACc -3'
miRNA:   3'- -CGGCGAUGGaGCg----GCUGGC-GC----------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 16491 0.69 0.38173
Target:  5'- cGCCaGCUucagcuuuGCCUCGCCGAucuUCGcCGCGGc- -3'
miRNA:   3'- -CGG-CGA--------UGGAGCGGCU---GGC-GCGCUug -5'
24076 5' -59.6 NC_005262.1 + 16553 0.69 0.373285
Target:  5'- aGCCGCU-CC-CGUucaCGGCCGCGgaugcCGAGCa -3'
miRNA:   3'- -CGGCGAuGGaGCG---GCUGGCGC-----GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 16616 0.71 0.282114
Target:  5'- aGCCGCguuucgaGCUgggcgauaUCGUCGuGCUGCGCGAGCa -3'
miRNA:   3'- -CGGCGa------UGG--------AGCGGC-UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 16647 0.69 0.348722
Target:  5'- -gCGC-GCCUCGCCGGUCGCGuCGAc- -3'
miRNA:   3'- cgGCGaUGGAGCGGCUGGCGC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 16968 0.72 0.237591
Target:  5'- gGCgCGCUuuUCUCGgCGAgCGCGCGGGCc -3'
miRNA:   3'- -CG-GCGAu-GGAGCgGCUgGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 16989 0.71 0.262268
Target:  5'- cCUGCUGCCgccgGCCGAgCGCGCGcuCg -3'
miRNA:   3'- cGGCGAUGGag--CGGCUgGCGCGCuuG- -5'
24076 5' -59.6 NC_005262.1 + 17258 0.72 0.225998
Target:  5'- aGCgGCgGCCggCGCCGcgcugggcuGCUGCGCGGGCa -3'
miRNA:   3'- -CGgCGaUGGa-GCGGC---------UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 17918 0.68 0.416755
Target:  5'- aGCCGCcgAUCggCGCCGA-CGCcaacgGCGAGCa -3'
miRNA:   3'- -CGGCGa-UGGa-GCGGCUgGCG-----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 18030 0.68 0.425814
Target:  5'- cGCCGCgaUGCCgaucggCGUCGcguUCGCGgGAACg -3'
miRNA:   3'- -CGGCG--AUGGa-----GCGGCu--GGCGCgCUUG- -5'
24076 5' -59.6 NC_005262.1 + 18161 0.77 0.114609
Target:  5'- -gCGCgUGCC-CGCCuGAUCGCGCGAGCg -3'
miRNA:   3'- cgGCG-AUGGaGCGG-CUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 18490 0.71 0.288989
Target:  5'- cGCCGUUguaGCCUUgGCCGACgaugccgacguuCGCGCGGAa -3'
miRNA:   3'- -CGGCGA---UGGAG-CGGCUG------------GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 18618 0.68 0.424903
Target:  5'- gGCCGUUACCcaUGuuGAUCgcguccgcacgcaGCGCGAGCg -3'
miRNA:   3'- -CGGCGAUGGa-GCggCUGG-------------CGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.