miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 18788 0.78 0.09744
Target:  5'- uGCCGCguguugGCgUcCGCCGccuGCCGCGCGGACu -3'
miRNA:   3'- -CGGCGa-----UGgA-GCGGC---UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 19637 0.73 0.194071
Target:  5'- cGCCGCgcuCCUgC-CCGAUCGCGCGcGCg -3'
miRNA:   3'- -CGGCGau-GGA-GcGGCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 19884 0.67 0.46318
Target:  5'- gGCCGCgguuggcGCCgCGCUGACCGCcuuCGAc- -3'
miRNA:   3'- -CGGCGa------UGGaGCGGCUGGCGc--GCUug -5'
24076 5' -59.6 NC_005262.1 + 20295 0.72 0.249678
Target:  5'- gGuuGCgaccGCCUUGCCGuCCGCGUaGACg -3'
miRNA:   3'- -CggCGa---UGGAGCGGCuGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 20399 0.67 0.502194
Target:  5'- cGCCGUUGagCUCGCCG-CCGaUGCucGCa -3'
miRNA:   3'- -CGGCGAUg-GAGCGGCuGGC-GCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 20738 0.66 0.532372
Target:  5'- uGCCGCgGCgCgcggUGCCGGCCGgGuCGAu- -3'
miRNA:   3'- -CGGCGaUG-Ga---GCGGCUGGCgC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 21523 0.72 0.243572
Target:  5'- cGCCGgUGCCcgUGCCGcucgucGCCGCaGUGAGCg -3'
miRNA:   3'- -CGGCgAUGGa-GCGGC------UGGCG-CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 21647 0.66 0.552848
Target:  5'- gGCCGCgACCggGCCcggcGCCGCGUaGACc -3'
miRNA:   3'- -CGGCGaUGGagCGGc---UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 21872 0.69 0.364968
Target:  5'- cGgCGCUGaa--GCCGACCGCGCagccGGACg -3'
miRNA:   3'- -CgGCGAUggagCGGCUGGCGCG----CUUG- -5'
24076 5' -59.6 NC_005262.1 + 22118 0.67 0.46318
Target:  5'- uGCCGaUGCCggUGCCGGCgGCGauGACg -3'
miRNA:   3'- -CGGCgAUGGa-GCGGCUGgCGCgcUUG- -5'
24076 5' -59.6 NC_005262.1 + 22150 0.67 0.4923
Target:  5'- cGCgGCUGCCcgcaUCGCCGAgCUGgagGCGAAg -3'
miRNA:   3'- -CGgCGAUGG----AGCGGCU-GGCg--CGCUUg -5'
24076 5' -59.6 NC_005262.1 + 22234 0.68 0.434989
Target:  5'- gGCCGCgccGCCcaCGCCGGCCG-GCcuGCg -3'
miRNA:   3'- -CGGCGa--UGGa-GCGGCUGGCgCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 22920 0.73 0.194071
Target:  5'- aCUGCUACgcgCUCGCCGAcgccaugcuCCGCGCGGGg -3'
miRNA:   3'- cGGCGAUG---GAGCGGCU---------GGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 23388 0.67 0.4923
Target:  5'- gGUCGCcgACgCgcgGCUGAauCCGCGCGAACg -3'
miRNA:   3'- -CGGCGa-UG-Gag-CGGCU--GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 23430 0.67 0.46318
Target:  5'- gGCCGUcgACgUCGCCGACgaucgacaucagCGCGCcGGCc -3'
miRNA:   3'- -CGGCGa-UGgAGCGGCUG------------GCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 23546 0.66 0.512175
Target:  5'- aCCGCgcagacugACCaacCGCCcGCCGCGCGcgGGCg -3'
miRNA:   3'- cGGCGa-------UGGa--GCGGcUGGCGCGC--UUG- -5'
24076 5' -59.6 NC_005262.1 + 23647 0.66 0.552848
Target:  5'- cGCCGC-ACCcUGuCCGgguuGCaGCGCGAGCg -3'
miRNA:   3'- -CGGCGaUGGaGC-GGC----UGgCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 24212 0.67 0.482497
Target:  5'- aGCCGCgacGCUgCGCCGGCaCGC-CGAu- -3'
miRNA:   3'- -CGGCGa--UGGaGCGGCUG-GCGcGCUug -5'
24076 5' -59.6 NC_005262.1 + 24998 0.66 0.532372
Target:  5'- uCCGUUGCUcgCGCCGugCaGCGCaugaucucGAACg -3'
miRNA:   3'- cGGCGAUGGa-GCGGCugG-CGCG--------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 25226 0.69 0.390301
Target:  5'- -gUGCUGCCcuucCGcCCGaACCGCGCGcAACg -3'
miRNA:   3'- cgGCGAUGGa---GC-GGC-UGGCGCGC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.