miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 25274 0.68 0.398122
Target:  5'- aCCGUguaGCuCUUGCCGGCCGUGCccccggaGAGCc -3'
miRNA:   3'- cGGCGa--UG-GAGCGGCUGGCGCG-------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 26986 0.67 0.502194
Target:  5'- aUCGCUcacGCC-CGCCGAgCGCGCc-GCa -3'
miRNA:   3'- cGGCGA---UGGaGCGGCUgGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 27672 0.72 0.231733
Target:  5'- cGgUGCUcGCCUCGCCGuAUCGCGC-AGCg -3'
miRNA:   3'- -CgGCGA-UGGAGCGGC-UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 28178 0.68 0.444277
Target:  5'- uGCCGUUGCCggacgacugCaacgccaucuguGCCGAgcCCGCGcCGAGCa -3'
miRNA:   3'- -CGGCGAUGGa--------G------------CGGCU--GGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 28444 0.68 0.415856
Target:  5'- cGCCGUgcucGCCgugUCGCCGAugaugcgcaugcaCUGCGCGAu- -3'
miRNA:   3'- -CGGCGa---UGG---AGCGGCU-------------GGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 28539 0.68 0.448023
Target:  5'- aCCGCUACCcguucaCGCCuaucuggggcuuccGCCGCGCGcGCg -3'
miRNA:   3'- cGGCGAUGGa-----GCGGc-------------UGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 28563 0.77 0.114301
Target:  5'- aGCCGCUGCCgaucgCGCCG-CCGaccuccgcauccuUGCGGACg -3'
miRNA:   3'- -CGGCGAUGGa----GCGGCuGGC-------------GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 28724 0.66 0.551819
Target:  5'- cGCCGCgagGCCgcgCGCCcggacgccgugauGACCGUGaaGAAUg -3'
miRNA:   3'- -CGGCGa--UGGa--GCGG-------------CUGGCGCg-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 28800 0.66 0.563176
Target:  5'- aCCGUgACCUCG-CGcCCGCGCaucucGAGCu -3'
miRNA:   3'- cGGCGaUGGAGCgGCuGGCGCG-----CUUG- -5'
24076 5' -59.6 NC_005262.1 + 28808 0.67 0.457464
Target:  5'- cGCUGCUGCCcggcugccuggagcuUCgacuugcgGCCGagcGCCGCGuCGAACu -3'
miRNA:   3'- -CGGCGAUGG---------------AG--------CGGC---UGGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 29306 0.7 0.303132
Target:  5'- aGUCGCg----CGCCG-CCGCGCGGAUg -3'
miRNA:   3'- -CGGCGauggaGCGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 29844 0.67 0.450844
Target:  5'- cGCCGCguuccgggaucgcuUGCCgcgUGCCcGCCGCGagcuCGAGCa -3'
miRNA:   3'- -CGGCG--------------AUGGa--GCGGcUGGCGC----GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 29893 0.78 0.092278
Target:  5'- cGCCGCUACCgaucgggcCGCCGGCCGaCGCa--- -3'
miRNA:   3'- -CGGCGAUGGa-------GCGGCUGGC-GCGcuug -5'
24076 5' -59.6 NC_005262.1 + 30106 0.69 0.364968
Target:  5'- gGCCGggACCUUGCCGaauuugGCCGUGUacGCg -3'
miRNA:   3'- -CGGCgaUGGAGCGGC------UGGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 30134 0.77 0.107717
Target:  5'- uGCCGCUGCUggUCGCCGaagcgccggcggauGCCGaCGCGAAg -3'
miRNA:   3'- -CGGCGAUGG--AGCGGC--------------UGGC-GCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 30626 0.67 0.453675
Target:  5'- aGCCGCcGCCgaCGCuCGGcaaggugcCCGCGuCGGACa -3'
miRNA:   3'- -CGGCGaUGGa-GCG-GCU--------GGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 30756 0.71 0.281434
Target:  5'- gGCCGCcgaucgugaugccUACCUCGCC--UCGCGCGGc- -3'
miRNA:   3'- -CGGCG-------------AUGGAGCGGcuGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 30904 0.74 0.184339
Target:  5'- cGCCGCcgGCUUgGCCGACguucgaCGCGgCGAACg -3'
miRNA:   3'- -CGGCGa-UGGAgCGGCUG------GCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 30958 0.68 0.444277
Target:  5'- gGCCGaaACCuugUCGCCGACguCGC-CGGACa -3'
miRNA:   3'- -CGGCgaUGG---AGCGGCUG--GCGcGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 31067 0.73 0.20425
Target:  5'- cGCCGacGCgCUCGCCGACCugaaGgGCGAGCc -3'
miRNA:   3'- -CGGCgaUG-GAGCGGCUGG----CgCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.