miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 50433 0.77 0.114609
Target:  5'- gGCCGCgugcACgUCGUCGuGCCGCGCGAGg -3'
miRNA:   3'- -CGGCGa---UGgAGCGGC-UGGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 50355 0.68 0.443343
Target:  5'- cCCGCgacgACCgcgagcggcgcauUCGUCGACCGUggcgacGCGAACc -3'
miRNA:   3'- cGGCGa---UGG-------------AGCGGCUGGCG------CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50320 0.71 0.288989
Target:  5'- aGCCG--GCCgcagCGCCcGCCGCGCaGGACg -3'
miRNA:   3'- -CGGCgaUGGa---GCGGcUGGCGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 50299 0.72 0.224301
Target:  5'- cGCCGCcuucGCCuUCGCCagcgaguagcgcgcGACgCGCGCGGGCu -3'
miRNA:   3'- -CGGCGa---UGG-AGCGG--------------CUG-GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50288 0.71 0.275369
Target:  5'- gGCCGa-GCC-CGUgaCGGCCGCGCGGAUu -3'
miRNA:   3'- -CGGCgaUGGaGCG--GCUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50123 0.73 0.199104
Target:  5'- gGCCGa-GCgCUCGCUGACCGaguggaGCGAGCc -3'
miRNA:   3'- -CGGCgaUG-GAGCGGCUGGCg-----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50081 0.79 0.084786
Target:  5'- gGCCGCUGCgC-CGaCCGaacccgcGCCGCGCGAACa -3'
miRNA:   3'- -CGGCGAUG-GaGC-GGC-------UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49992 0.7 0.340795
Target:  5'- cCCGCU-CC-CGCCGaugaaGCCGCGCcGGCg -3'
miRNA:   3'- cGGCGAuGGaGCGGC-----UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 49782 0.71 0.284163
Target:  5'- gGCCGCUGCCgCGCCggacgccccugcaccGuccggcccgaucgGCCGCGCGAu- -3'
miRNA:   3'- -CGGCGAUGGaGCGG---------------C-------------UGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 49743 0.73 0.214888
Target:  5'- aGCCGC-ACCgaCGCCGGCgGCGCccGCg -3'
miRNA:   3'- -CGGCGaUGGa-GCGGCUGgCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 49586 0.67 0.482497
Target:  5'- aUCGC-GCC-CGCCGucaguGCCGCGUGGAg -3'
miRNA:   3'- cGGCGaUGGaGCGGC-----UGGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 49439 0.66 0.563176
Target:  5'- aCCGCcGCCa-GUCGACgCGCGCaAGCa -3'
miRNA:   3'- cGGCGaUGGagCGGCUG-GCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 49358 0.68 0.398997
Target:  5'- cGCuCGCUGacgaCUCGgCGACgCGCGCGuuCa -3'
miRNA:   3'- -CG-GCGAUg---GAGCgGCUG-GCGCGCuuG- -5'
24076 5' -59.6 NC_005262.1 + 49285 0.69 0.38173
Target:  5'- uGCUGUUGCCgaUCGCCuuguaGCGCGGACc -3'
miRNA:   3'- -CGGCGAUGG--AGCGGcugg-CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49215 0.68 0.407816
Target:  5'- gGCCGagggcgGCCUCGgCGGCgcgcaguccgCGCGCGAGg -3'
miRNA:   3'- -CGGCga----UGGAGCgGCUG----------GCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 48655 0.68 0.434989
Target:  5'- cGCCGaCU-CgaCGCCGGCCGCgauGCGuGCa -3'
miRNA:   3'- -CGGC-GAuGgaGCGGCUGGCG---CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 48563 0.68 0.425814
Target:  5'- gGCCGCUACaaggUGCuCGAcCCGaacgaaGCGAGCc -3'
miRNA:   3'- -CGGCGAUGga--GCG-GCU-GGCg-----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 48463 0.69 0.35678
Target:  5'- uGCCGCgcggaUCGCgaGCCGCGUGGGCa -3'
miRNA:   3'- -CGGCGaugg-AGCGgcUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 48396 0.71 0.288989
Target:  5'- aCCGC-GCCUCGCUGAagCGCgGCGAAa -3'
miRNA:   3'- cGGCGaUGGAGCGGCUg-GCG-CGCUUg -5'
24076 5' -59.6 NC_005262.1 + 48076 0.72 0.225998
Target:  5'- uGCCGCgacgaGCCgcccggCGCCGA-CGCGCGAu- -3'
miRNA:   3'- -CGGCGa----UGGa-----GCGGCUgGCGCGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.