miRNA display CGI


Results 61 - 80 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 47730 0.78 0.099851
Target:  5'- cGCCGCcugUAUCUggugcgcCGCCGGCCGCGgCGAACc -3'
miRNA:   3'- -CGGCG---AUGGA-------GCGGCUGGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 47198 0.69 0.390301
Target:  5'- cGCgGCUGCUUCGCCGccucgaccagcACaCGCGCcuGCu -3'
miRNA:   3'- -CGgCGAUGGAGCGGC-----------UG-GCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 46825 0.68 0.425814
Target:  5'- cCCGC-GCgCUCGCCGAgaaaagCGCGcCGAGCg -3'
miRNA:   3'- cGGCGaUG-GAGCGGCUg-----GCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 46769 0.66 0.532372
Target:  5'- aGCUGCUuuuccGCCUCgGUCGACUucagcacgacgaGCGCGcGCu -3'
miRNA:   3'- -CGGCGA-----UGGAG-CGGCUGG------------CGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 46717 0.74 0.18339
Target:  5'- cGCCGCgucgacgggcgcGCCUaucggCGCCGugCGCGCGAc- -3'
miRNA:   3'- -CGGCGa-----------UGGA-----GCGGCugGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 46672 0.66 0.532372
Target:  5'- cGCCGgcACCgacgccCGCCGaugcagucagcGCCGCGCGcGCa -3'
miRNA:   3'- -CGGCgaUGGa-----GCGGC-----------UGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 46635 0.69 0.34633
Target:  5'- cGCgCGCgGCCUUGCCGGCCuucucgauugcgacGCGCGc-- -3'
miRNA:   3'- -CG-GCGaUGGAGCGGCUGG--------------CGCGCuug -5'
24076 5' -59.6 NC_005262.1 + 46586 0.66 0.522235
Target:  5'- aGCCGCUuuuCCUCGgugauaaCGGCCuuGCuGAACg -3'
miRNA:   3'- -CGGCGAu--GGAGCg------GCUGGcgCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 46442 0.71 0.262268
Target:  5'- cGCCGCgccGCCcgCGCCGgacccgaauGCCGCGCcGGCc -3'
miRNA:   3'- -CGGCGa--UGGa-GCGGC---------UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 46252 0.76 0.134572
Target:  5'- gGCUGCcGCCUCGCgcgCGACCGCGUGcccguGCa -3'
miRNA:   3'- -CGGCGaUGGAGCG---GCUGGCGCGCu----UG- -5'
24076 5' -59.6 NC_005262.1 + 46129 0.66 0.522235
Target:  5'- cGCCGCUuCCa-GCuCGGCgCGCugGCGGGCg -3'
miRNA:   3'- -CGGCGAuGGagCG-GCUG-GCG--CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 45961 0.66 0.563176
Target:  5'- gGCCGCguuuccAUCUCGCCaguuGCCGgGguCGAACg -3'
miRNA:   3'- -CGGCGa-----UGGAGCGGc---UGGCgC--GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 45874 0.67 0.482497
Target:  5'- cGCCGUUGgCgucggCGCCGAUCG-GCGGc- -3'
miRNA:   3'- -CGGCGAUgGa----GCGGCUGGCgCGCUug -5'
24076 5' -59.6 NC_005262.1 + 45258 0.66 0.552848
Target:  5'- aCCgGCaACCUcggagCGUCGAacgcgaacuuCCGCGCGAACg -3'
miRNA:   3'- cGG-CGaUGGA-----GCGGCU----------GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 45123 0.66 0.542578
Target:  5'- uGCCGCgaacACCgcgCGCCaGAaCGUGCGcGACa -3'
miRNA:   3'- -CGGCGa---UGGa--GCGG-CUgGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 44551 0.69 0.348722
Target:  5'- uGCCGUUccuguUCUCGCCGGCCGauaCGCaGGCa -3'
miRNA:   3'- -CGGCGAu----GGAGCGGCUGGC---GCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 43860 0.69 0.38173
Target:  5'- cGCCgGCaggACCUCgGCgCGAUCGCGCGcAUg -3'
miRNA:   3'- -CGG-CGa--UGGAG-CG-GCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 43821 0.73 0.214888
Target:  5'- cGCgGCgacacgGCCgcggGCCGGCCGCGCGcGGCg -3'
miRNA:   3'- -CGgCGa-----UGGag--CGGCUGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 43610 0.67 0.4923
Target:  5'- aUCGCgcaggugACgCUCGCCGGCaccgGCGCaGAACu -3'
miRNA:   3'- cGGCGa------UG-GAGCGGCUGg---CGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 43475 0.69 0.364968
Target:  5'- aGCCGCU-UCguggCGgCGACCGUcuacGCGGACg -3'
miRNA:   3'- -CGGCGAuGGa---GCgGCUGGCG----CGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.