miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 43290 0.71 0.295995
Target:  5'- cGUCGCgagcGCCgCGCCGAUggugCGCGCGAuuACg -3'
miRNA:   3'- -CGGCGa---UGGaGCGGCUG----GCGCGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 43025 0.76 0.13244
Target:  5'- gGCCGCUACCUCGCCagcuacgaguacaucGAcccggccggcaCCGCGCGccGCg -3'
miRNA:   3'- -CGGCGAUGGAGCGG---------------CU-----------GGCGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 42568 0.72 0.225998
Target:  5'- aGCCGCUucCCUCGCuCGaauggaacgcGCCGC-CGGACg -3'
miRNA:   3'- -CGGCGAu-GGAGCG-GC----------UGGCGcGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 42371 0.67 0.4923
Target:  5'- aGCuCGCgga--CGUCGGCCGuCGCGAGCu -3'
miRNA:   3'- -CG-GCGauggaGCGGCUGGC-GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 42165 0.66 0.522235
Target:  5'- gGCCGUcGCCgUCGCCG-UCGCacucCGGGCa -3'
miRNA:   3'- -CGGCGaUGG-AGCGGCuGGCGc---GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 42084 0.69 0.390301
Target:  5'- gGCCGU--CCUUGCCGAuCUGCGUGcccGCg -3'
miRNA:   3'- -CGGCGauGGAGCGGCU-GGCGCGCu--UG- -5'
24076 5' -59.6 NC_005262.1 + 41968 0.69 0.348722
Target:  5'- uGCCGC-GCCUguUGCCugacaccGCCGCGCaGAACg -3'
miRNA:   3'- -CGGCGaUGGA--GCGGc------UGGCGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 41664 0.69 0.38173
Target:  5'- aGCCGCggcgGCCagacgaUUGCCGGCCaCGUGcAGCa -3'
miRNA:   3'- -CGGCGa---UGG------AGCGGCUGGcGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 41583 0.66 0.542578
Target:  5'- gGCCGUgAgCUUGUCGA--GCGCGAGCc -3'
miRNA:   3'- -CGGCGaUgGAGCGGCUggCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 41452 0.71 0.288295
Target:  5'- cGCgGCUACCguuaCGCUGACCGCagcccagaugccgGCGcACa -3'
miRNA:   3'- -CGgCGAUGGa---GCGGCUGGCG-------------CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 41182 0.67 0.470859
Target:  5'- cGCCGCgaucgcgugcgcGCC-CGgCGACCGCuuCGAGCa -3'
miRNA:   3'- -CGGCGa-----------UGGaGCgGCUGGCGc-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 40443 0.75 0.166162
Target:  5'- cGCCGCgcGCUUcaCGCCGGCCGUGguCGAGCg -3'
miRNA:   3'- -CGGCGa-UGGA--GCGGCUGGCGC--GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 40304 0.66 0.542578
Target:  5'- gGCCGCagcaguucaACCcCGgCGACCGCuuCGAGCa -3'
miRNA:   3'- -CGGCGa--------UGGaGCgGCUGGCGc-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 40090 0.69 0.354349
Target:  5'- cGCCGCguggucgACCgugCGCCGguagacccacacgcGCCGCuCGGGCg -3'
miRNA:   3'- -CGGCGa------UGGa--GCGGC--------------UGGCGcGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 39469 0.68 0.407816
Target:  5'- aGCCGCaugucgAUCgCGCCGACCauCGCGAGa -3'
miRNA:   3'- -CGGCGa-----UGGaGCGGCUGGc-GCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 39060 0.7 0.303132
Target:  5'- gGCCGCa----CGCCGAUCGCGCGcGCc -3'
miRNA:   3'- -CGGCGauggaGCGGCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 38968 0.66 0.542578
Target:  5'- uCgGC-ACggCGCCGGCCGCgaucGCGAGCu -3'
miRNA:   3'- cGgCGaUGgaGCGGCUGGCG----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 38820 0.66 0.546679
Target:  5'- uGCCGCcucgACCaaGCCGGCCuguuccugaagcuggGCGCGccGCg -3'
miRNA:   3'- -CGGCGa---UGGagCGGCUGG---------------CGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 38049 0.74 0.18915
Target:  5'- gGCCGUgagcGgCUUGCCGGCCuGCGCGAu- -3'
miRNA:   3'- -CGGCGa---UgGAGCGGCUGG-CGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 37807 0.75 0.145713
Target:  5'- cGUCGCgaacgUGCC-CGCCGuguACUGCGCGAGCg -3'
miRNA:   3'- -CGGCG-----AUGGaGCGGC---UGGCGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.