Results 61 - 80 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 42568 | 0.72 | 0.225998 |
Target: 5'- aGCCGCUucCCUCGCuCGaauggaacgcGCCGC-CGGACg -3' miRNA: 3'- -CGGCGAu-GGAGCG-GC----------UGGCGcGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 48076 | 0.72 | 0.225998 |
Target: 5'- uGCCGCgacgaGCCgcccggCGCCGA-CGCGCGAu- -3' miRNA: 3'- -CGGCGa----UGGa-----GCGGCUgGCGCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 16616 | 0.71 | 0.282114 |
Target: 5'- aGCCGCguuucgaGCUgggcgauaUCGUCGuGCUGCGCGAGCa -3' miRNA: 3'- -CGGCGa------UGG--------AGCGGC-UGGCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 50586 | 0.71 | 0.282114 |
Target: 5'- cCCGCUGCCgcucaacCCGGuaGCGCGAGCg -3' miRNA: 3'- cGGCGAUGGagc----GGCUggCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 49782 | 0.71 | 0.284163 |
Target: 5'- gGCCGCUGCCgCGCCggacgccccugcaccGuccggcccgaucgGCCGCGCGAu- -3' miRNA: 3'- -CGGCGAUGGaGCGG---------------C-------------UGGCGCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 41452 | 0.71 | 0.288295 |
Target: 5'- cGCgGCUACCguuaCGCUGACCGCagcccagaugccgGCGcACa -3' miRNA: 3'- -CGgCGAUGGa---GCGGCUGGCG-------------CGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 48396 | 0.71 | 0.288989 |
Target: 5'- aCCGC-GCCUCGCUGAagCGCgGCGAAa -3' miRNA: 3'- cGGCGaUGGAGCGGCUg-GCG-CGCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 50320 | 0.71 | 0.288989 |
Target: 5'- aGCCG--GCCgcagCGCCcGCCGCGCaGGACg -3' miRNA: 3'- -CGGCgaUGGa---GCGGcUGGCGCG-CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6298 | 0.71 | 0.288989 |
Target: 5'- cGCCGCcuucuUGCgCUCGCCGGCCGCcucuCGucGGCg -3' miRNA: 3'- -CGGCG-----AUG-GAGCGGCUGGCGc---GC--UUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 32731 | 0.71 | 0.295995 |
Target: 5'- gGCgUGCUGCCg-GCCGACCacucCGUGAGCg -3' miRNA: 3'- -CG-GCGAUGGagCGGCUGGc---GCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 7177 | 0.71 | 0.282114 |
Target: 5'- uGCCGCUACCgCGUaauuGCgGCGCGAuuGCa -3' miRNA: 3'- -CGGCGAUGGaGCGgc--UGgCGCGCU--UG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 30756 | 0.71 | 0.281434 |
Target: 5'- gGCCGCcgaucgugaugccUACCUCGCC--UCGCGCGGc- -3' miRNA: 3'- -CGGCG-------------AUGGAGCGGcuGGCGCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 12104 | 0.72 | 0.243572 |
Target: 5'- gGgCGCaAUCagcgcCGCCGugCGCGCGAGCa -3' miRNA: 3'- -CgGCGaUGGa----GCGGCugGCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 16989 | 0.71 | 0.262268 |
Target: 5'- cCUGCUGCCgccgGCCGAgCGCGCGcuCg -3' miRNA: 3'- cGGCGAUGGag--CGGCUgGCGCGCuuG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 35144 | 0.71 | 0.262268 |
Target: 5'- uGUCGCUGCauacCGCCGAuCCGgGCGAc- -3' miRNA: 3'- -CGGCGAUGga--GCGGCU-GGCgCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 46442 | 0.71 | 0.262268 |
Target: 5'- cGCCGCgccGCCcgCGCCGgacccgaauGCCGCGCcGGCc -3' miRNA: 3'- -CGGCGa--UGGa-GCGGC---------UGGCGCGcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 52944 | 0.71 | 0.262268 |
Target: 5'- cGCCGCcuggGCUUCGCCGGCgGCaaggugcuCGAGCc -3' miRNA: 3'- -CGGCGa---UGGAGCGGCUGgCGc-------GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 12579 | 0.71 | 0.268754 |
Target: 5'- aGCUGCUGCUgcCGCCGGCgaggCGuCGCGGAUg -3' miRNA: 3'- -CGGCGAUGGa-GCGGCUG----GC-GCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 11412 | 0.71 | 0.275369 |
Target: 5'- aGCCGC-GCCgCGCCgGGCCGC-CGAAg -3' miRNA: 3'- -CGGCGaUGGaGCGG-CUGGCGcGCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 50288 | 0.71 | 0.275369 |
Target: 5'- gGCCGa-GCC-CGUgaCGGCCGCGCGGAUu -3' miRNA: 3'- -CGGCgaUGGaGCG--GCUGGCGCGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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