miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 13741 0.7 0.339225
Target:  5'- cGCCGUgccaggcauucaGCCUCGCgGGuCUGCGUGAAUc -3'
miRNA:   3'- -CGGCGa-----------UGGAGCGgCU-GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6229 0.7 0.340795
Target:  5'- cGCCGagaUGCUgaaGCCcGCCGCGCGcACg -3'
miRNA:   3'- -CGGCg--AUGGag-CGGcUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 55216 0.7 0.340795
Target:  5'- cGCCGUcGCUUCGUCGcgcagGCCGCGCucAACa -3'
miRNA:   3'- -CGGCGaUGGAGCGGC-----UGGCGCGc-UUG- -5'
24076 5' -59.6 NC_005262.1 + 11569 0.7 0.340795
Target:  5'- cGCgCGCUGCUaUGCCGGCgGCGgccagcgcuCGAGCg -3'
miRNA:   3'- -CG-GCGAUGGaGCGGCUGgCGC---------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49992 0.7 0.340795
Target:  5'- cCCGCU-CC-CGCCGaugaaGCCGCGCcGGCg -3'
miRNA:   3'- cGGCGAuGGaGCGGC-----UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 41968 0.69 0.348722
Target:  5'- uGCCGC-GCCUguUGCCugacaccGCCGCGCaGAACg -3'
miRNA:   3'- -CGGCGaUGGA--GCGGc------UGGCGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 44551 0.69 0.348722
Target:  5'- uGCCGUUccuguUCUCGCCGGCCGauaCGCaGGCa -3'
miRNA:   3'- -CGGCGAu----GGAGCGGCUGGC---GCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 32731 0.71 0.295995
Target:  5'- gGCgUGCUGCCg-GCCGACCacucCGUGAGCg -3'
miRNA:   3'- -CG-GCGAUGGagCGGCUGGc---GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6298 0.71 0.288989
Target:  5'- cGCCGCcuucuUGCgCUCGCCGGCCGCcucuCGucGGCg -3'
miRNA:   3'- -CGGCG-----AUG-GAGCGGCUGGCGc---GC--UUG- -5'
24076 5' -59.6 NC_005262.1 + 50320 0.71 0.288989
Target:  5'- aGCCG--GCCgcagCGCCcGCCGCGCaGGACg -3'
miRNA:   3'- -CGGCgaUGGa---GCGGcUGGCGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 11412 0.71 0.275369
Target:  5'- aGCCGC-GCCgCGCCgGGCCGC-CGAAg -3'
miRNA:   3'- -CGGCGaUGGaGCGG-CUGGCGcGCUUg -5'
24076 5' -59.6 NC_005262.1 + 50288 0.71 0.275369
Target:  5'- gGCCGa-GCC-CGUgaCGGCCGCGCGGAUu -3'
miRNA:   3'- -CGGCgaUGGaGCG--GCUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 30756 0.71 0.281434
Target:  5'- gGCCGCcgaucgugaugccUACCUCGCC--UCGCGCGGc- -3'
miRNA:   3'- -CGGCG-------------AUGGAGCGGcuGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 7177 0.71 0.282114
Target:  5'- uGCCGCUACCgCGUaauuGCgGCGCGAuuGCa -3'
miRNA:   3'- -CGGCGAUGGaGCGgc--UGgCGCGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 16616 0.71 0.282114
Target:  5'- aGCCGCguuucgaGCUgggcgauaUCGUCGuGCUGCGCGAGCa -3'
miRNA:   3'- -CGGCGa------UGG--------AGCGGC-UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50586 0.71 0.282114
Target:  5'- cCCGCUGCCgcucaacCCGGuaGCGCGAGCg -3'
miRNA:   3'- cGGCGAUGGagc----GGCUggCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49782 0.71 0.284163
Target:  5'- gGCCGCUGCCgCGCCggacgccccugcaccGuccggcccgaucgGCCGCGCGAu- -3'
miRNA:   3'- -CGGCGAUGGaGCGG---------------C-------------UGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 41452 0.71 0.288295
Target:  5'- cGCgGCUACCguuaCGCUGACCGCagcccagaugccgGCGcACa -3'
miRNA:   3'- -CGgCGAUGGa---GCGGCUGGCG-------------CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 48396 0.71 0.288989
Target:  5'- aCCGC-GCCUCGCUGAagCGCgGCGAAa -3'
miRNA:   3'- cGGCGaUGGAGCGGCUg-GCG-CGCUUg -5'
24076 5' -59.6 NC_005262.1 + 51512 0.69 0.348722
Target:  5'- gGCCGCaACggCGagaCGACCGUGCGcAACa -3'
miRNA:   3'- -CGGCGaUGgaGCg--GCUGGCGCGC-UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.