miRNA display CGI


Results 101 - 120 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 16616 0.71 0.282114
Target:  5'- aGCCGCguuucgaGCUgggcgauaUCGUCGuGCUGCGCGAGCa -3'
miRNA:   3'- -CGGCGa------UGG--------AGCGGC-UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50586 0.71 0.282114
Target:  5'- cCCGCUGCCgcucaacCCGGuaGCGCGAGCg -3'
miRNA:   3'- cGGCGAUGGagc----GGCUggCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 49782 0.71 0.284163
Target:  5'- gGCCGCUGCCgCGCCggacgccccugcaccGuccggcccgaucgGCCGCGCGAu- -3'
miRNA:   3'- -CGGCGAUGGaGCGG---------------C-------------UGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 41452 0.71 0.288295
Target:  5'- cGCgGCUACCguuaCGCUGACCGCagcccagaugccgGCGcACa -3'
miRNA:   3'- -CGgCGAUGGa---GCGGCUGGCG-------------CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 48396 0.71 0.288989
Target:  5'- aCCGC-GCCUCGCUGAagCGCgGCGAAa -3'
miRNA:   3'- cGGCGaUGGAGCGGCUg-GCG-CGCUUg -5'
24076 5' -59.6 NC_005262.1 + 5029 0.7 0.332999
Target:  5'- aGCgGCagUugCUCGCCGGCCgGCGCcugaucggcGGGCa -3'
miRNA:   3'- -CGgCG--AugGAGCGGCUGG-CGCG---------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 34151 0.71 0.295995
Target:  5'- -aCGuCUACC-CGCCGGCCGuCGCcGGCa -3'
miRNA:   3'- cgGC-GAUGGaGCGGCUGGC-GCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 32731 0.71 0.295995
Target:  5'- gGCgUGCUGCCg-GCCGACCacucCGUGAGCg -3'
miRNA:   3'- -CG-GCGAUGGagCGGCUGGc---GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6298 0.71 0.288989
Target:  5'- cGCCGCcuucuUGCgCUCGCCGGCCGCcucuCGucGGCg -3'
miRNA:   3'- -CGGCG-----AUG-GAGCGGCUGGCGc---GC--UUG- -5'
24076 5' -59.6 NC_005262.1 + 50320 0.71 0.288989
Target:  5'- aGCCG--GCCgcagCGCCcGCCGCGCaGGACg -3'
miRNA:   3'- -CGGCgaUGGa---GCGGcUGGCGCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 38820 0.66 0.546679
Target:  5'- uGCCGCcucgACCaaGCCGGCCuguuccugaagcuggGCGCGccGCg -3'
miRNA:   3'- -CGGCGa---UGGagCGGCUGG---------------CGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 21647 0.66 0.552848
Target:  5'- gGCCGCgACCggGCCcggcGCCGCGUaGACc -3'
miRNA:   3'- -CGGCGaUGGagCGGc---UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 52823 0.66 0.552848
Target:  5'- cGgCGUUcCCggcgCGCCGAacaGCGCGAAUg -3'
miRNA:   3'- -CgGCGAuGGa---GCGGCUgg-CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 23647 0.66 0.552848
Target:  5'- cGCCGC-ACCcUGuCCGgguuGCaGCGCGAGCg -3'
miRNA:   3'- -CGGCGaUGGaGC-GGC----UGgCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6809 0.66 0.560072
Target:  5'- cGUCGCgcuugucguaggcggUCUUGCCGACCacgccCGCGAACu -3'
miRNA:   3'- -CGGCGau-------------GGAGCGGCUGGc----GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6375 0.66 0.562141
Target:  5'- uGCCGgaGCgUUGUCGGCCGCcuucucgGCGGu- -3'
miRNA:   3'- -CGGCgaUGgAGCGGCUGGCG-------CGCUug -5'
24076 5' -59.6 NC_005262.1 + 51449 0.66 0.562141
Target:  5'- gGCCGUauuCCUucaaugcUGCCG-CCGCGCGcuGCg -3'
miRNA:   3'- -CGGCGau-GGA-------GCGGCuGGCGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 2723 0.66 0.563176
Target:  5'- gGCUGCgcCUUCGUCGACgGCGUa--- -3'
miRNA:   3'- -CGGCGauGGAGCGGCUGgCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 45961 0.66 0.563176
Target:  5'- gGCCGCguuuccAUCUCGCCaguuGCCGgGguCGAACg -3'
miRNA:   3'- -CGGCGa-----UGGAGCGGc---UGGCgC--GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 58741 0.8 0.069561
Target:  5'- cGCCGCggGCCUgcccgccgaucaggCGCCGGCCG-GCGAGCa -3'
miRNA:   3'- -CGGCGa-UGGA--------------GCGGCUGGCgCGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.