miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 4000 0.66 0.522235
Target:  5'- gGCCGgUGCCcucgaggaacgCGuuGACC-UGCGAGCg -3'
miRNA:   3'- -CGGCgAUGGa----------GCggCUGGcGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 46769 0.66 0.532372
Target:  5'- aGCUGCUuuuccGCCUCgGUCGACUucagcacgacgaGCGCGcGCu -3'
miRNA:   3'- -CGGCGA-----UGGAG-CGGCUGG------------CGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 41583 0.66 0.542578
Target:  5'- gGCCGUgAgCUUGUCGA--GCGCGAGCc -3'
miRNA:   3'- -CGGCGaUgGAGCGGCUggCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 51449 0.66 0.562141
Target:  5'- gGCCGUauuCCUucaaugcUGCCG-CCGCGCGcuGCg -3'
miRNA:   3'- -CGGCGau-GGA-------GCGGCuGGCGCGCu-UG- -5'
24076 5' -59.6 NC_005262.1 + 61643 0.67 0.482497
Target:  5'- aGCCGC-GCUgaugCGCUGACCGaugcacaaCGCaGAACg -3'
miRNA:   3'- -CGGCGaUGGa---GCGGCUGGC--------GCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 20399 0.67 0.502194
Target:  5'- cGCCGUUGagCUCGCCG-CCGaUGCucGCa -3'
miRNA:   3'- -CGGCGAUg-GAGCGGCuGGC-GCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 8224 0.66 0.532372
Target:  5'- cGCgCGCUGCga-GCCGGCCGgGuCGAu- -3'
miRNA:   3'- -CG-GCGAUGgagCGGCUGGCgC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 2723 0.66 0.563176
Target:  5'- gGCUGCgcCUUCGUCGACgGCGUa--- -3'
miRNA:   3'- -CGGCGauGGAGCGGCUGgCGCGcuug -5'
24076 5' -59.6 NC_005262.1 + 12429 0.66 0.512175
Target:  5'- gGCCG--GCgUCGCgGACgGCGCGGu- -3'
miRNA:   3'- -CGGCgaUGgAGCGgCUGgCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 45961 0.66 0.563176
Target:  5'- gGCCGCguuuccAUCUCGCCaguuGCCGgGguCGAACg -3'
miRNA:   3'- -CGGCGa-----UGGAGCGGc---UGGCgC--GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 53078 0.66 0.532372
Target:  5'- uUUGCgggagCGCCGGCCGCGUGcGCg -3'
miRNA:   3'- cGGCGauggaGCGGCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 46586 0.66 0.522235
Target:  5'- aGCCGCUuuuCCUCGgugauaaCGGCCuuGCuGAACg -3'
miRNA:   3'- -CGGCGAu--GGAGCg------GCUGGcgCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 20738 0.66 0.532372
Target:  5'- uGCCGCgGCgCgcggUGCCGGCCGgGuCGAu- -3'
miRNA:   3'- -CGGCGaUG-Ga---GCGGCUGGCgC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 6666 0.66 0.542578
Target:  5'- gGCCGCgauguaCUCGCCGgagcccuugaGCUGCGUgccgugGAACa -3'
miRNA:   3'- -CGGCGaug---GAGCGGC----------UGGCGCG------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 52823 0.66 0.552848
Target:  5'- cGgCGUUcCCggcgCGCCGAacaGCGCGAAUg -3'
miRNA:   3'- -CgGCGAuGGa---GCGGCUgg-CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6375 0.66 0.562141
Target:  5'- uGCCGgaGCgUUGUCGGCCGCcuucucgGCGGu- -3'
miRNA:   3'- -CGGCgaUGgAGCGGCUGGCG-------CGCUug -5'
24076 5' -59.6 NC_005262.1 + 1049 0.67 0.472789
Target:  5'- uGCCgaauGCUGCggCGCUGACCGCcaGCGcGCc -3'
miRNA:   3'- -CGG----CGAUGgaGCGGCUGGCG--CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 45874 0.67 0.482497
Target:  5'- cGCCGUUGgCgucggCGCCGAUCG-GCGGc- -3'
miRNA:   3'- -CGGCGAUgGa----GCGGCUGGCgCGCUug -5'
24076 5' -59.6 NC_005262.1 + 42371 0.67 0.4923
Target:  5'- aGCuCGCgga--CGUCGGCCGuCGCGAGCu -3'
miRNA:   3'- -CG-GCGauggaGCGGCUGGC-GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 59235 0.67 0.4923
Target:  5'- cGCCGCUGgCgcgagaugCGCCG--CGCGCGcACg -3'
miRNA:   3'- -CGGCGAUgGa-------GCGGCugGCGCGCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.