Results 41 - 60 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 49586 | 0.67 | 0.482497 |
Target: 5'- aUCGC-GCC-CGCCGucaguGCCGCGUGGAg -3' miRNA: 3'- cGGCGaUGGaGCGGC-----UGGCGCGCUUg -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 8224 | 0.66 | 0.532372 |
Target: 5'- cGCgCGCUGCga-GCCGGCCGgGuCGAu- -3' miRNA: 3'- -CG-GCGAUGgagCGGCUGGCgC-GCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 2723 | 0.66 | 0.563176 |
Target: 5'- gGCUGCgcCUUCGUCGACgGCGUa--- -3' miRNA: 3'- -CGGCGauGGAGCGGCUGgCGCGcuug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 51252 | 0.67 | 0.482497 |
Target: 5'- cGCCGCgACCU-GCCG-CCGCaacauggagGCGAucGCg -3' miRNA: 3'- -CGGCGaUGGAgCGGCuGGCG---------CGCU--UG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 45961 | 0.66 | 0.563176 |
Target: 5'- gGCCGCguuuccAUCUCGCCaguuGCCGgGguCGAACg -3' miRNA: 3'- -CGGCGa-----UGGAGCGGc---UGGCgC--GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 13507 | 0.68 | 0.425814 |
Target: 5'- uCCGCgcgGCCgucacggGCuCGGCCgGCGCGGGCg -3' miRNA: 3'- cGGCGa--UGGag-----CG-GCUGG-CGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6375 | 0.66 | 0.562141 |
Target: 5'- uGCCGgaGCgUUGUCGGCCGCcuucucgGCGGu- -3' miRNA: 3'- -CGGCgaUGgAGCGGCUGGCG-------CGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 48655 | 0.68 | 0.434989 |
Target: 5'- cGCCGaCU-CgaCGCCGGCCGCgauGCGuGCa -3' miRNA: 3'- -CGGC-GAuGgaGCGGCUGGCG---CGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 28178 | 0.68 | 0.444277 |
Target: 5'- uGCCGUUGCCggacgacugCaacgccaucuguGCCGAgcCCGCGcCGAGCa -3' miRNA: 3'- -CGGCGAUGGa--------G------------CGGCU--GGCGC-GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 10979 | 0.67 | 0.453675 |
Target: 5'- aGCCGCUcGCCgagCGCCuGCCacUGCGAAUc -3' miRNA: 3'- -CGGCGA-UGGa--GCGGcUGGc-GCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 19884 | 0.67 | 0.46318 |
Target: 5'- gGCCGCgguuggcGCCgCGCUGACCGCcuuCGAc- -3' miRNA: 3'- -CGGCGa------UGGaGCGGCUGGCGc--GCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 1049 | 0.67 | 0.472789 |
Target: 5'- uGCCgaauGCUGCggCGCUGACCGCcaGCGcGCc -3' miRNA: 3'- -CGG----CGAUGgaGCGGCUGGCG--CGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 45874 | 0.67 | 0.482497 |
Target: 5'- cGCCGUUGgCgucggCGCCGAUCG-GCGGc- -3' miRNA: 3'- -CGGCGAUgGa----GCGGCUGGCgCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 34360 | 0.67 | 0.4923 |
Target: 5'- uGCCGCaGCCUUGCgGGCCuuCGCcugcugcuccucGAGCg -3' miRNA: 3'- -CGGCGaUGGAGCGgCUGGc-GCG------------CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 12429 | 0.66 | 0.512175 |
Target: 5'- gGCCG--GCgUCGCgGACgGCGCGGu- -3' miRNA: 3'- -CGGCgaUGgAGCGgCUGgCGCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 4000 | 0.66 | 0.522235 |
Target: 5'- gGCCGgUGCCcucgaggaacgCGuuGACC-UGCGAGCg -3' miRNA: 3'- -CGGCgAUGGa----------GCggCUGGcGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 46769 | 0.66 | 0.532372 |
Target: 5'- aGCUGCUuuuccGCCUCgGUCGACUucagcacgacgaGCGCGcGCu -3' miRNA: 3'- -CGGCGA-----UGGAG-CGGCUGG------------CGCGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 20738 | 0.66 | 0.532372 |
Target: 5'- uGCCGCgGCgCgcggUGCCGGCCGgGuCGAu- -3' miRNA: 3'- -CGGCGaUG-Ga---GCGGCUGGCgC-GCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6666 | 0.66 | 0.542578 |
Target: 5'- gGCCGCgauguaCUCGCCGgagcccuugaGCUGCGUgccgugGAACa -3' miRNA: 3'- -CGGCGaug---GAGCGGC----------UGGCGCG------CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 52823 | 0.66 | 0.552848 |
Target: 5'- cGgCGUUcCCggcgCGCCGAacaGCGCGAAUg -3' miRNA: 3'- -CgGCGAuGGa---GCGGCUgg-CGCGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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