Results 61 - 80 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24076 | 5' | -59.6 | NC_005262.1 | + | 45874 | 0.67 | 0.482497 |
Target: 5'- cGCCGUUGgCgucggCGCCGAUCG-GCGGc- -3' miRNA: 3'- -CGGCGAUgGa----GCGGCUGGCgCGCUug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 22118 | 0.67 | 0.46318 |
Target: 5'- uGCCGaUGCCggUGCCGGCgGCGauGACg -3' miRNA: 3'- -CGGCgAUGGa-GCGGCUGgCGCgcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 6809 | 0.66 | 0.560072 |
Target: 5'- cGUCGCgcuugucguaggcggUCUUGCCGACCacgccCGCGAACu -3' miRNA: 3'- -CGGCGau-------------GGAGCGGCUGGc----GCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 21647 | 0.66 | 0.552848 |
Target: 5'- gGCCGCgACCggGCCcggcGCCGCGUaGACc -3' miRNA: 3'- -CGGCGaUGGagCGGc---UGGCGCGcUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 38968 | 0.66 | 0.542578 |
Target: 5'- uCgGC-ACggCGCCGGCCGCgaucGCGAGCu -3' miRNA: 3'- cGgCGaUGgaGCGGCUGGCG----CGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 24998 | 0.66 | 0.532372 |
Target: 5'- uCCGUUGCUcgCGCCGugCaGCGCaugaucucGAACg -3' miRNA: 3'- cGGCGAUGGa-GCGGCugG-CGCG--------CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 46129 | 0.66 | 0.522235 |
Target: 5'- cGCCGCUuCCa-GCuCGGCgCGCugGCGGGCg -3' miRNA: 3'- -CGGCGAuGGagCG-GCUG-GCG--CGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 46586 | 0.66 | 0.522235 |
Target: 5'- aGCCGCUuuuCCUCGgugauaaCGGCCuuGCuGAACg -3' miRNA: 3'- -CGGCGAu--GGAGCg------GCUGGcgCG-CUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 20399 | 0.67 | 0.502194 |
Target: 5'- cGCCGUUGagCUCGCCG-CCGaUGCucGCa -3' miRNA: 3'- -CGGCGAUg-GAGCGGCuGGC-GCGcuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 23388 | 0.67 | 0.4923 |
Target: 5'- gGUCGCcgACgCgcgGCUGAauCCGCGCGAACg -3' miRNA: 3'- -CGGCGa-UG-Gag-CGGCU--GGCGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 30106 | 0.69 | 0.364968 |
Target: 5'- gGCCGggACCUUGCCGaauuugGCCGUGUacGCg -3' miRNA: 3'- -CGGCgaUGGAGCGGC------UGGCGCGcuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 14556 | 0.69 | 0.373285 |
Target: 5'- gGUCGCggACCUCGCgcgcgGACUGCGCGc-- -3' miRNA: 3'- -CGGCGa-UGGAGCGg----CUGGCGCGCuug -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 28808 | 0.67 | 0.457464 |
Target: 5'- cGCUGCUGCCcggcugccuggagcuUCgacuugcgGCCGagcGCCGCGuCGAACu -3' miRNA: 3'- -CGGCGAUGG---------------AG--------CGGC---UGGCGC-GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 29844 | 0.67 | 0.450844 |
Target: 5'- cGCCGCguuccgggaucgcuUGCCgcgUGCCcGCCGCGagcuCGAGCa -3' miRNA: 3'- -CGGCG--------------AUGGa--GCGGcUGGCGC----GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 48655 | 0.68 | 0.434989 |
Target: 5'- cGCCGaCU-CgaCGCCGGCCGCgauGCGuGCa -3' miRNA: 3'- -CGGC-GAuGgaGCGGCUGGCG---CGCuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 13507 | 0.68 | 0.425814 |
Target: 5'- uCCGCgcgGCCgucacggGCuCGGCCgGCGCGGGCg -3' miRNA: 3'- cGGCGa--UGGag-----CG-GCUGG-CGCGCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 14592 | 0.68 | 0.407816 |
Target: 5'- gGCCGCccucggccagcaUGCCggagaucaUCGCCGugCGCGCcgcuGCg -3' miRNA: 3'- -CGGCG------------AUGG--------AGCGGCugGCGCGcu--UG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 10224 | 0.68 | 0.407816 |
Target: 5'- -aUGCUGCCggucaGCgCGugCGCGcCGAGCa -3' miRNA: 3'- cgGCGAUGGag---CG-GCugGCGC-GCUUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 47198 | 0.69 | 0.390301 |
Target: 5'- cGCgGCUGCUUCGCCGccucgaccagcACaCGCGCcuGCu -3' miRNA: 3'- -CGgCGAUGGAGCGGC-----------UG-GCGCGcuUG- -5' |
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24076 | 5' | -59.6 | NC_005262.1 | + | 49285 | 0.69 | 0.38173 |
Target: 5'- uGCUGUUGCCgaUCGCCuuguaGCGCGGACc -3' miRNA: 3'- -CGGCGAUGG--AGCGGcugg-CGCGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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