miRNA display CGI


Results 81 - 100 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 4943 0.67 0.453675
Target:  5'- cGCCgGCgugACgUCGCCGAuCUGCGUGccgaAGCg -3'
miRNA:   3'- -CGG-CGa--UGgAGCGGCU-GGCGCGC----UUG- -5'
24076 5' -59.6 NC_005262.1 + 33492 0.68 0.444277
Target:  5'- cGCuCGCggucuggGCCUUGUCGACaGCGCGcuCg -3'
miRNA:   3'- -CG-GCGa------UGGAGCGGCUGgCGCGCuuG- -5'
24076 5' -59.6 NC_005262.1 + 8523 0.68 0.434989
Target:  5'- uGCCGaugcgGCCgaaCGCCGAgUGCGUGAu- -3'
miRNA:   3'- -CGGCga---UGGa--GCGGCUgGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 18618 0.68 0.424903
Target:  5'- gGCCGUUACCcaUGuuGAUCgcguccgcacgcaGCGCGAGCg -3'
miRNA:   3'- -CGGCGAUGGa-GCggCUGG-------------CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 58492 0.68 0.407816
Target:  5'- gGCCaGCU-CCgacCGCCucGACCGCGUGAu- -3'
miRNA:   3'- -CGG-CGAuGGa--GCGG--CUGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 47198 0.69 0.390301
Target:  5'- cGCgGCUGCUUCGCCGccucgaccagcACaCGCGCcuGCu -3'
miRNA:   3'- -CGgCGAUGGAGCGGC-----------UG-GCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 49285 0.69 0.38173
Target:  5'- uGCUGUUGCCgaUCGCCuuguaGCGCGGACc -3'
miRNA:   3'- -CGGCGAUGG--AGCGGcugg-CGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 23388 0.67 0.4923
Target:  5'- gGUCGCcgACgCgcgGCUGAauCCGCGCGAACg -3'
miRNA:   3'- -CGGCGa-UG-Gag-CGGCU--GGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 20399 0.67 0.502194
Target:  5'- cGCCGUUGagCUCGCCG-CCGaUGCucGCa -3'
miRNA:   3'- -CGGCGAUg-GAGCGGCuGGC-GCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 46586 0.66 0.522235
Target:  5'- aGCCGCUuuuCCUCGgugauaaCGGCCuuGCuGAACg -3'
miRNA:   3'- -CGGCGAu--GGAGCg------GCUGGcgCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 16647 0.69 0.348722
Target:  5'- -gCGC-GCCUCGCCGGUCGCGuCGAc- -3'
miRNA:   3'- cgGCGaUGGAGCGGCUGGCGC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 11955 0.7 0.325334
Target:  5'- cGCCGCgcuucagcACUUCGCgacguCGGCCGCGCuGAAg -3'
miRNA:   3'- -CGGCGa-------UGGAGCG-----GCUGGCGCG-CUUg -5'
24076 5' -59.6 NC_005262.1 + 29306 0.7 0.303132
Target:  5'- aGUCGCg----CGCCG-CCGCGCGGAUg -3'
miRNA:   3'- -CGGCGauggaGCGGCuGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 4855 0.71 0.268754
Target:  5'- aCUGCUGCg-CGCCGACCGagaaGCGcGCg -3'
miRNA:   3'- cGGCGAUGgaGCGGCUGGCg---CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 10339 0.72 0.255909
Target:  5'- cGCCGUUGuCCUcgaCGCCGgcGCCGCGCuucuggagGAACa -3'
miRNA:   3'- -CGGCGAU-GGA---GCGGC--UGGCGCG--------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 6809 0.66 0.560072
Target:  5'- cGUCGCgcuugucguaggcggUCUUGCCGACCacgccCGCGAACu -3'
miRNA:   3'- -CGGCGau-------------GGAGCGGCUGGc----GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 21647 0.66 0.552848
Target:  5'- gGCCGCgACCggGCCcggcGCCGCGUaGACc -3'
miRNA:   3'- -CGGCGaUGGagCGGc---UGGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 38968 0.66 0.542578
Target:  5'- uCgGC-ACggCGCCGGCCGCgaucGCGAGCu -3'
miRNA:   3'- cGgCGaUGgaGCGGCUGGCG----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 24998 0.66 0.532372
Target:  5'- uCCGUUGCUcgCGCCGugCaGCGCaugaucucGAACg -3'
miRNA:   3'- cGGCGAUGGa-GCGGCugG-CGCG--------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 46129 0.66 0.522235
Target:  5'- cGCCGCUuCCa-GCuCGGCgCGCugGCGGGCg -3'
miRNA:   3'- -CGGCGAuGGagCG-GCUG-GCG--CGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.