miRNA display CGI


Results 101 - 120 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 36264 0.72 0.225998
Target:  5'- aGCuCGC--CCUCGUCgGugCGCGCGGGCa -3'
miRNA:   3'- -CG-GCGauGGAGCGG-CugGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 4498 0.73 0.209511
Target:  5'- aGCCGCcguccggcaUGuCCUCGuuGAuCCGCGCGAcGCg -3'
miRNA:   3'- -CGGCG---------AU-GGAGCggCU-GGCGCGCU-UG- -5'
24076 5' -59.6 NC_005262.1 + 50976 0.73 0.199104
Target:  5'- gGCCGCgcuCCUucuucacgCGCCGGCUGCGCGc-- -3'
miRNA:   3'- -CGGCGau-GGA--------GCGGCUGGCGCGCuug -5'
24076 5' -59.6 NC_005262.1 + 38049 0.74 0.18915
Target:  5'- gGCCGUgagcGgCUUGCCGGCCuGCGCGAu- -3'
miRNA:   3'- -CGGCGa---UgGAGCGGCUGG-CGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 30904 0.74 0.184339
Target:  5'- cGCCGCcgGCUUgGCCGACguucgaCGCGgCGAACg -3'
miRNA:   3'- -CGGCGa-UGGAgCGGCUG------GCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6515 0.69 0.390301
Target:  5'- uCUGCUGCaCgcggGCCGugaGCUGCGCGAGCu -3'
miRNA:   3'- cGGCGAUG-Gag--CGGC---UGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 25274 0.68 0.398122
Target:  5'- aCCGUguaGCuCUUGCCGGCCGUGCccccggaGAGCc -3'
miRNA:   3'- cGGCGa--UG-GAGCGGCUGGCGCG-------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 10834 0.66 0.532372
Target:  5'- uGCCcgGCUcgagcACCUUGCCG-CCG-GCGAAg -3'
miRNA:   3'- -CGG--CGA-----UGGAGCGGCuGGCgCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 46769 0.66 0.532372
Target:  5'- aGCUGCUuuuccGCCUCgGUCGACUucagcacgacgaGCGCGcGCu -3'
miRNA:   3'- -CGGCGA-----UGGAG-CGGCUGG------------CGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 46586 0.66 0.522235
Target:  5'- aGCCGCUuuuCCUCGgugauaaCGGCCuuGCuGAACg -3'
miRNA:   3'- -CGGCGAu--GGAGCg------GCUGGcgCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 12429 0.66 0.512175
Target:  5'- gGCCG--GCgUCGCgGACgGCGCGGu- -3'
miRNA:   3'- -CGGCgaUGgAGCGgCUGgCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 42371 0.67 0.4923
Target:  5'- aGCuCGCgga--CGUCGGCCGuCGCGAGCu -3'
miRNA:   3'- -CG-GCGauggaGCGGCUGGC-GCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 61643 0.67 0.482497
Target:  5'- aGCCGC-GCUgaugCGCUGACCGaugcacaaCGCaGAACg -3'
miRNA:   3'- -CGGCGaUGGa---GCGGCUGGC--------GCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 1049 0.67 0.472789
Target:  5'- uGCCgaauGCUGCggCGCUGACCGCcaGCGcGCc -3'
miRNA:   3'- -CGG----CGAUGgaGCGGCUGGCG--CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 23430 0.67 0.46318
Target:  5'- gGCCGUcgACgUCGCCGACgaucgacaucagCGCGCcGGCc -3'
miRNA:   3'- -CGGCGa-UGgAGCGGCUG------------GCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 29844 0.67 0.450844
Target:  5'- cGCCGCguuccgggaucgcuUGCCgcgUGCCcGCCGCGagcuCGAGCa -3'
miRNA:   3'- -CGGCG--------------AUGGa--GCGGcUGGCGC----GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 28178 0.68 0.444277
Target:  5'- uGCCGUUGCCggacgacugCaacgccaucuguGCCGAgcCCGCGcCGAGCa -3'
miRNA:   3'- -CGGCGAUGGa--------G------------CGGCU--GGCGC-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 8523 0.68 0.434989
Target:  5'- uGCCGaugcgGCCgaaCGCCGAgUGCGUGAu- -3'
miRNA:   3'- -CGGCga---UGGa--GCGGCUgGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 5001 0.68 0.425814
Target:  5'- cGCCGaucACgUCGUCGACCcaGCGCcgGAACg -3'
miRNA:   3'- -CGGCga-UGgAGCGGCUGG--CGCG--CUUG- -5'
24076 5' -59.6 NC_005262.1 + 39469 0.68 0.407816
Target:  5'- aGCCGCaugucgAUCgCGCCGACCauCGCGAGa -3'
miRNA:   3'- -CGGCGa-----UGGaGCGGCUGGc-GCGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.