miRNA display CGI


Results 121 - 140 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 12668 0.69 0.348722
Target:  5'- cGUCGagcGCCUUGUCGACCgGCGCGucgAGCa -3'
miRNA:   3'- -CGGCga-UGGAGCGGCUGG-CGCGC---UUG- -5'
24076 5' -59.6 NC_005262.1 + 11808 0.69 0.369943
Target:  5'- uGCCGCUguucaguugcgaACCggacaguuucgagCGCaGGCgCGCGCGAGCg -3'
miRNA:   3'- -CGGCGA------------UGGa------------GCGgCUG-GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 12618 0.69 0.373285
Target:  5'- gGCCGCcGCgUCGUCGGCUGCcugcuGCGcGCu -3'
miRNA:   3'- -CGGCGaUGgAGCGGCUGGCG-----CGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 2627 0.69 0.389438
Target:  5'- cGCCGCgcGCCcgucagcUCGCCcGCCGcCGCGAu- -3'
miRNA:   3'- -CGGCGa-UGG-------AGCGGcUGGC-GCGCUug -5'
24076 5' -59.6 NC_005262.1 + 42084 0.69 0.390301
Target:  5'- gGCCGU--CCUUGCCGAuCUGCGUGcccGCg -3'
miRNA:   3'- -CGGCGauGGAGCGGCU-GGCGCGCu--UG- -5'
24076 5' -59.6 NC_005262.1 + 232 0.7 0.313345
Target:  5'- -aCGCUACC--GCCGGCggcggcgggacauuuCGCGCGGACg -3'
miRNA:   3'- cgGCGAUGGagCGGCUG---------------GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 43290 0.71 0.295995
Target:  5'- cGUCGCgagcGCCgCGCCGAUggugCGCGCGAuuACg -3'
miRNA:   3'- -CGGCGa---UGGaGCGGCUG----GCGCGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 51151 0.68 0.398997
Target:  5'- cGCCGUgaagAagUCGCCGAgCGCGC-AGCa -3'
miRNA:   3'- -CGGCGa---UggAGCGGCUgGCGCGcUUG- -5'
24076 5' -59.6 NC_005262.1 + 7177 0.71 0.282114
Target:  5'- uGCCGCUACCgCGUaauuGCgGCGCGAuuGCa -3'
miRNA:   3'- -CGGCGAUGGaGCGgc--UGgCGCGCU--UG- -5'
24076 5' -59.6 NC_005262.1 + 25226 0.69 0.390301
Target:  5'- -gUGCUGCCcuucCGcCCGaACCGCGCGcAACg -3'
miRNA:   3'- cgGCGAUGGa---GC-GGC-UGGCGCGC-UUG- -5'
24076 5' -59.6 NC_005262.1 + 43860 0.69 0.38173
Target:  5'- cGCCgGCaggACCUCgGCgCGAUCGCGCGcAUg -3'
miRNA:   3'- -CGG-CGa--UGGAG-CG-GCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 3670 0.69 0.38173
Target:  5'- cUCGCgGCCgUCGCUGGCCGUGaCGAc- -3'
miRNA:   3'- cGGCGaUGG-AGCGGCUGGCGC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 11412 0.71 0.275369
Target:  5'- aGCCGC-GCCgCGCCgGGCCGC-CGAAg -3'
miRNA:   3'- -CGGCGaUGGaGCGG-CUGGCGcGCUUg -5'
24076 5' -59.6 NC_005262.1 + 50288 0.71 0.275369
Target:  5'- gGCCGa-GCC-CGUgaCGGCCGCGCGGAUu -3'
miRNA:   3'- -CGGCgaUGGaGCG--GCUGGCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 30756 0.71 0.281434
Target:  5'- gGCCGCcgaucgugaugccUACCUCGCC--UCGCGCGGc- -3'
miRNA:   3'- -CGGCG-------------AUGGAGCGGcuGGCGCGCUug -5'
24076 5' -59.6 NC_005262.1 + 16553 0.69 0.373285
Target:  5'- aGCCGCU-CC-CGUucaCGGCCGCGgaugcCGAGCa -3'
miRNA:   3'- -CGGCGAuGGaGCG---GCUGGCGC-----GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 6865 0.69 0.38173
Target:  5'- gGCCGUaguCCUCggcgauGCCGGCCGCGaucgcguuuuCGAGCc -3'
miRNA:   3'- -CGGCGau-GGAG------CGGCUGGCGC----------GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 31067 0.73 0.20425
Target:  5'- cGCCGacGCgCUCGCCGACCugaaGgGCGAGCc -3'
miRNA:   3'- -CGGCgaUG-GAGCGGCUGG----CgCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 50123 0.73 0.199104
Target:  5'- gGCCGa-GCgCUCGCUGACCGaguggaGCGAGCc -3'
miRNA:   3'- -CGGCgaUG-GAGCGGCUGGCg-----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 35926 0.69 0.38173
Target:  5'- gGCCuCgACUUUGCCuACCGUGUGAACg -3'
miRNA:   3'- -CGGcGaUGGAGCGGcUGGCGCGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.