miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24076 5' -59.6 NC_005262.1 + 41583 0.66 0.542578
Target:  5'- gGCCGUgAgCUUGUCGA--GCGCGAGCc -3'
miRNA:   3'- -CGGCGaUgGAGCGGCUggCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 36008 0.66 0.542578
Target:  5'- uGCCGCgcgagUGCCgUCGCaucaucguGCCGCGUGGAg -3'
miRNA:   3'- -CGGCG-----AUGG-AGCGgc------UGGCGCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 6666 0.66 0.542578
Target:  5'- gGCCGCgauguaCUCGCCGgagcccuugaGCUGCGUgccgugGAACa -3'
miRNA:   3'- -CGGCGaug---GAGCGGC----------UGGCGCG------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 40304 0.66 0.542578
Target:  5'- gGCCGCagcaguucaACCcCGgCGACCGCuuCGAGCa -3'
miRNA:   3'- -CGGCGa--------UGGaGCgGCUGGCGc-GCUUG- -5'
24076 5' -59.6 NC_005262.1 + 38968 0.66 0.542578
Target:  5'- uCgGC-ACggCGCCGGCCGCgaucGCGAGCu -3'
miRNA:   3'- cGgCGaUGgaGCGGCUGGCG----CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 59140 0.66 0.542578
Target:  5'- gGCCGg-GCCgCGUCG-CCGCGCGcAUg -3'
miRNA:   3'- -CGGCgaUGGaGCGGCuGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 63092 0.66 0.536446
Target:  5'- -gCGCUACaucaucgacgacgaaCUCGCCGAggugacgUGCGCGGACu -3'
miRNA:   3'- cgGCGAUG---------------GAGCGGCUg------GCGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 46769 0.66 0.532372
Target:  5'- aGCUGCUuuuccGCCUCgGUCGACUucagcacgacgaGCGCGcGCu -3'
miRNA:   3'- -CGGCGA-----UGGAG-CGGCUGG------------CGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 24998 0.66 0.532372
Target:  5'- uCCGUUGCUcgCGCCGugCaGCGCaugaucucGAACg -3'
miRNA:   3'- cGGCGAUGGa-GCGGCugG-CGCG--------CUUG- -5'
24076 5' -59.6 NC_005262.1 + 20738 0.66 0.532372
Target:  5'- uGCCGCgGCgCgcggUGCCGGCCGgGuCGAu- -3'
miRNA:   3'- -CGGCGaUG-Ga---GCGGCUGGCgC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 53078 0.66 0.532372
Target:  5'- uUUGCgggagCGCCGGCCGCGUGcGCg -3'
miRNA:   3'- cGGCGauggaGCGGCUGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 8224 0.66 0.532372
Target:  5'- cGCgCGCUGCga-GCCGGCCGgGuCGAu- -3'
miRNA:   3'- -CG-GCGAUGgagCGGCUGGCgC-GCUug -5'
24076 5' -59.6 NC_005262.1 + 46672 0.66 0.532372
Target:  5'- cGCCGgcACCgacgccCGCCGaugcagucagcGCCGCGCGcGCa -3'
miRNA:   3'- -CGGCgaUGGa-----GCGGC-----------UGGCGCGCuUG- -5'
24076 5' -59.6 NC_005262.1 + 10834 0.66 0.532372
Target:  5'- uGCCcgGCUcgagcACCUUGCCG-CCG-GCGAAg -3'
miRNA:   3'- -CGG--CGA-----UGGAGCGGCuGGCgCGCUUg -5'
24076 5' -59.6 NC_005262.1 + 33663 0.66 0.532372
Target:  5'- -gCGC-GCCUCGCUGgucGCCGCGUacACg -3'
miRNA:   3'- cgGCGaUGGAGCGGC---UGGCGCGcuUG- -5'
24076 5' -59.6 NC_005262.1 + 68 0.66 0.522235
Target:  5'- gGCCGCgg-CUCGCgaagaaguCGGCCGCGCcGcACg -3'
miRNA:   3'- -CGGCGaugGAGCG--------GCUGGCGCG-CuUG- -5'
24076 5' -59.6 NC_005262.1 + 46586 0.66 0.522235
Target:  5'- aGCCGCUuuuCCUCGgugauaaCGGCCuuGCuGAACg -3'
miRNA:   3'- -CGGCGAu--GGAGCg------GCUGGcgCG-CUUG- -5'
24076 5' -59.6 NC_005262.1 + 4000 0.66 0.522235
Target:  5'- gGCCGgUGCCcucgaggaacgCGuuGACC-UGCGAGCg -3'
miRNA:   3'- -CGGCgAUGGa----------GCggCUGGcGCGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 46129 0.66 0.522235
Target:  5'- cGCCGCUuCCa-GCuCGGCgCGCugGCGGGCg -3'
miRNA:   3'- -CGGCGAuGGagCG-GCUG-GCG--CGCUUG- -5'
24076 5' -59.6 NC_005262.1 + 42165 0.66 0.522235
Target:  5'- gGCCGUcGCCgUCGCCG-UCGCacucCGGGCa -3'
miRNA:   3'- -CGGCGaUGG-AGCGGCuGGCGc---GCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.