miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 3' -53.3 NC_005262.1 + 14251 0.66 0.863027
Target:  5'- ----cAGGACGcagcguCGCCGGagACGGAAGu -3'
miRNA:   3'- caaguUCCUGUu-----GCGGCCg-UGCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 30005 0.66 0.863027
Target:  5'- --aCAAGGGCAGCGaagaUGGCAa-GAAGu -3'
miRNA:   3'- caaGUUCCUGUUGCg---GCCGUgcCUUC- -5'
24077 3' -53.3 NC_005262.1 + 45701 0.66 0.863027
Target:  5'- -aUCGAGGGcCGGCaGCCGGC-CGuGAu- -3'
miRNA:   3'- caAGUUCCU-GUUG-CGGCCGuGC-CUuc -5'
24077 3' -53.3 NC_005262.1 + 5580 0.66 0.863027
Target:  5'- aGUUCGugguacGGGCGGCGCCgcucuccgcaGGCgacGCGGAAa -3'
miRNA:   3'- -CAAGUu-----CCUGUUGCGG----------CCG---UGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 17555 0.66 0.854713
Target:  5'- --gCGAGGcgGCAgccGCGgCGGCGCGcGAAGc -3'
miRNA:   3'- caaGUUCC--UGU---UGCgGCCGUGC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 27565 0.66 0.854713
Target:  5'- --gCGAGGACGccGCGCa-GCGCGaGAAGc -3'
miRNA:   3'- caaGUUCCUGU--UGCGgcCGUGC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 50269 0.66 0.854713
Target:  5'- --aCGAGGGCGcgcccGCGCCGGCcgagcccgugACGGc-- -3'
miRNA:   3'- caaGUUCCUGU-----UGCGGCCG----------UGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 18053 0.66 0.854713
Target:  5'- cGUUCGcGGGaACGAUGUCGG-ACGGGAu -3'
miRNA:   3'- -CAAGU-UCC-UGUUGCGGCCgUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 60732 0.66 0.846164
Target:  5'- --aCAAGGACcgcuggcucGGCGaaGGCugGGAGa -3'
miRNA:   3'- caaGUUCCUG---------UUGCggCCGugCCUUc -5'
24077 3' -53.3 NC_005262.1 + 10247 0.66 0.837387
Target:  5'- --aCAAGGACAAgGCgagCGGCGacaucaaGGAGGc -3'
miRNA:   3'- caaGUUCCUGUUgCG---GCCGUg------CCUUC- -5'
24077 3' -53.3 NC_005262.1 + 60250 0.66 0.828392
Target:  5'- -gUCAAGGccGCGauACGCCGGCAgugucaggggUGGAu- -3'
miRNA:   3'- caAGUUCC--UGU--UGCGGCCGU----------GCCUuc -5'
24077 3' -53.3 NC_005262.1 + 59299 0.66 0.819189
Target:  5'- --aCGAGGAC-AUGCCGG-ACGGcGGc -3'
miRNA:   3'- caaGUUCCUGuUGCGGCCgUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 32206 0.66 0.819189
Target:  5'- -gUCgAAGGugAugcgauCGCCGGCGuCGGAu- -3'
miRNA:   3'- caAG-UUCCugUu-----GCGGCCGU-GCCUuc -5'
24077 3' -53.3 NC_005262.1 + 14012 0.67 0.800195
Target:  5'- --gCAGGGGCGu--CCGGCGCGGcAGc -3'
miRNA:   3'- caaGUUCCUGUugcGGCCGUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 62664 0.67 0.774454
Target:  5'- -gUCGGGGGuggguuuaguccgccCGGCGgCGGCAgGGGAGc -3'
miRNA:   3'- caAGUUCCU---------------GUUGCgGCCGUgCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 17351 0.67 0.7704
Target:  5'- aUUCGGGucCGGCGCgggCGGCGCGGcGGg -3'
miRNA:   3'- cAAGUUCcuGUUGCG---GCCGUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 48726 0.68 0.760164
Target:  5'- cGUUCuGGGACAACGUguCGGauguCGGGAa -3'
miRNA:   3'- -CAAGuUCCUGUUGCG--GCCgu--GCCUUc -5'
24077 3' -53.3 NC_005262.1 + 45438 0.68 0.760164
Target:  5'- -cUUAuGGGCGGgcucggaaccauCGCCGGCGCGGGc- -3'
miRNA:   3'- caAGUuCCUGUU------------GCGGCCGUGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 29877 0.68 0.760164
Target:  5'- --aCGAGGA--GCGCgCGGCGCuucaGGAAGa -3'
miRNA:   3'- caaGUUCCUguUGCG-GCCGUG----CCUUC- -5'
24077 3' -53.3 NC_005262.1 + 35533 0.68 0.758101
Target:  5'- --gCAGGGcuucggccaagccGCGAugucgcuCGCCGGCGCGGGAa -3'
miRNA:   3'- caaGUUCC-------------UGUU-------GCGGCCGUGCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.