miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 3' -53.3 NC_005262.1 + 178 0.7 0.630307
Target:  5'- aGUUCGGcucGGACGgcuucaugguccACGCCGGCGgGGgcGg -3'
miRNA:   3'- -CAAGUU---CCUGU------------UGCGGCCGUgCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 5011 0.69 0.674486
Target:  5'- -gUCGucGACccAGCGCCGGaaCGCGGAGGg -3'
miRNA:   3'- caAGUucCUG--UUGCGGCC--GUGCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 5580 0.66 0.863027
Target:  5'- aGUUCGugguacGGGCGGCGCCgcucuccgcaGGCgacGCGGAAa -3'
miRNA:   3'- -CAAGUu-----CCUGUUGCGG----------CCG---UGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 10247 0.66 0.837387
Target:  5'- --aCAAGGACAAgGCgagCGGCGacaucaaGGAGGc -3'
miRNA:   3'- caaGUUCCUGUUgCG---GCCGUg------CCUUC- -5'
24077 3' -53.3 NC_005262.1 + 12796 0.7 0.61924
Target:  5'- cGUgagCAuuGGGCGGCgcgcaGCCGGCGCGuGAAGa -3'
miRNA:   3'- -CAa--GUu-CCUGUUG-----CGGCCGUGC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 13518 0.71 0.575182
Target:  5'- -gUCAcGGGCucgGCCGGCGCGGGc- -3'
miRNA:   3'- caAGUuCCUGuugCGGCCGUGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 13784 0.76 0.316089
Target:  5'- cUUCAcuucGGugGGCGCCGGCGCGGc-- -3'
miRNA:   3'- cAAGUu---CCugUUGCGGCCGUGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 14012 0.67 0.800195
Target:  5'- --gCAGGGGCGu--CCGGCGCGGcAGc -3'
miRNA:   3'- caaGUUCCUGUugcGGCCGUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 14251 0.66 0.863027
Target:  5'- ----cAGGACGcagcguCGCCGGagACGGAAGu -3'
miRNA:   3'- caaguUCCUGUu-----GCGGCCg-UGCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 17215 0.72 0.500179
Target:  5'- --gCGAGGACGGCGCUGGCGuCGuGGu- -3'
miRNA:   3'- caaGUUCCUGUUGCGGCCGU-GC-CUuc -5'
24077 3' -53.3 NC_005262.1 + 17321 0.68 0.718014
Target:  5'- -gUCGAcGGGCugcgucGugGCCGGCGCGGc-- -3'
miRNA:   3'- caAGUU-CCUG------UugCGGCCGUGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 17351 0.67 0.7704
Target:  5'- aUUCGGGucCGGCGCgggCGGCGCGGcGGg -3'
miRNA:   3'- cAAGUUCcuGUUGCG---GCCGUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 17459 0.69 0.652434
Target:  5'- cGUUCGAGGACuuCGCCGaGUuccaGGAc- -3'
miRNA:   3'- -CAAGUUCCUGuuGCGGC-CGug--CCUuc -5'
24077 3' -53.3 NC_005262.1 + 17555 0.66 0.854713
Target:  5'- --gCGAGGcgGCAgccGCGgCGGCGCGcGAAGc -3'
miRNA:   3'- caaGUUCC--UGU---UGCgGCCGUGC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 18053 0.66 0.854713
Target:  5'- cGUUCGcGGGaACGAUGUCGG-ACGGGAu -3'
miRNA:   3'- -CAAGU-UCC-UGUUGCGGCCgUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 27565 0.66 0.854713
Target:  5'- --gCGAGGACGccGCGCa-GCGCGaGAAGc -3'
miRNA:   3'- caaGUUCCUGU--UGCGgcCGUGC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 29040 0.68 0.749796
Target:  5'- -cUCGA--GCGGCGCCGGCACGa--- -3'
miRNA:   3'- caAGUUccUGUUGCGGCCGUGCcuuc -5'
24077 3' -53.3 NC_005262.1 + 29877 0.68 0.760164
Target:  5'- --aCGAGGA--GCGCgCGGCGCuucaGGAAGa -3'
miRNA:   3'- caaGUUCCUguUGCG-GCCGUG----CCUUC- -5'
24077 3' -53.3 NC_005262.1 + 29941 0.7 0.61924
Target:  5'- -cUgAAGGACGAC-CCGGaCGCGGgcGg -3'
miRNA:   3'- caAgUUCCUGUUGcGGCC-GUGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 30005 0.66 0.863027
Target:  5'- --aCAAGGGCAGCGaagaUGGCAa-GAAGu -3'
miRNA:   3'- caaGUUCCUGUUGCg---GCCGUgcCUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.