miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 3' -53.3 NC_005262.1 + 62664 0.67 0.774454
Target:  5'- -gUCGGGGGuggguuuaguccgccCGGCGgCGGCAgGGGAGc -3'
miRNA:   3'- caAGUUCCU---------------GUUGCgGCCGUgCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 62317 0.69 0.696376
Target:  5'- --gCAGcGGCAGCGCCGGCagacgaGCGGgcGg -3'
miRNA:   3'- caaGUUcCUGUUGCGGCCG------UGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 60732 0.66 0.846164
Target:  5'- --aCAAGGACcgcuggcucGGCGaaGGCugGGAGa -3'
miRNA:   3'- caaGUUCCUG---------UUGCggCCGugCCUUc -5'
24077 3' -53.3 NC_005262.1 + 60552 0.71 0.575182
Target:  5'- --gCAAGGGCAcgcugacgccgGCGCuCGGCGCGGu-- -3'
miRNA:   3'- caaGUUCCUGU-----------UGCG-GCCGUGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 60250 0.66 0.828392
Target:  5'- -gUCAAGGccGCGauACGCCGGCAgugucaggggUGGAu- -3'
miRNA:   3'- caAGUUCC--UGU--UGCGGCCGU----------GCCUuc -5'
24077 3' -53.3 NC_005262.1 + 59299 0.66 0.819189
Target:  5'- --aCGAGGAC-AUGCCGG-ACGGcGGc -3'
miRNA:   3'- caaGUUCCUGuUGCGGCCgUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 58560 0.71 0.550155
Target:  5'- --cCAAGGcgGCGagaagcugaucggcACGCCGGCAUGGAAu -3'
miRNA:   3'- caaGUUCC--UGU--------------UGCGGCCGUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 57479 0.68 0.718014
Target:  5'- -gUCGAGGGCGAgaaGCCGGC-CGacGAGGc -3'
miRNA:   3'- caAGUUCCUGUUg--CGGCCGuGC--CUUC- -5'
24077 3' -53.3 NC_005262.1 + 57037 0.69 0.652434
Target:  5'- cUUCAAGGAgcugGCCGGCAaGGAGGc -3'
miRNA:   3'- cAAGUUCCUguugCGGCCGUgCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 55069 0.68 0.718014
Target:  5'- -aUgGAGGA--GCGCCGGCugGGc-- -3'
miRNA:   3'- caAgUUCCUguUGCGGCCGugCCuuc -5'
24077 3' -53.3 NC_005262.1 + 53466 0.75 0.348527
Target:  5'- -gUCGAGGACAACGgcgugaaguggcUCGGCACGGccGa -3'
miRNA:   3'- caAGUUCCUGUUGC------------GGCCGUGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 53398 1.09 0.001961
Target:  5'- cGUUCAAGGACAACGCCGGCACGGAAGu -3'
miRNA:   3'- -CAAGUUCCUGUUGCGGCCGUGCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 50806 0.68 0.749796
Target:  5'- --cCGAGGGCAuggagcgcuucGCGCCGGagACGGGc- -3'
miRNA:   3'- caaGUUCCUGU-----------UGCGGCCg-UGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 50269 0.66 0.854713
Target:  5'- --aCGAGGGCGcgcccGCGCCGGCcgagcccgugACGGc-- -3'
miRNA:   3'- caaGUUCCUGU-----UGCGGCCG----------UGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 48726 0.68 0.760164
Target:  5'- cGUUCuGGGACAACGUguCGGauguCGGGAa -3'
miRNA:   3'- -CAAGuUCCUGUUGCG--GCCgu--GCCUUc -5'
24077 3' -53.3 NC_005262.1 + 45701 0.66 0.863027
Target:  5'- -aUCGAGGGcCGGCaGCCGGC-CGuGAu- -3'
miRNA:   3'- caAGUUCCU-GUUG-CGGCCGuGC-CUuc -5'
24077 3' -53.3 NC_005262.1 + 45438 0.68 0.760164
Target:  5'- -cUUAuGGGCGGgcucggaaccauCGCCGGCGCGGGc- -3'
miRNA:   3'- caAGUuCCUGUU------------GCGGCCGUGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 39248 0.71 0.586147
Target:  5'- -aUCAgcAGGAUcACGCCGGCGauCGcGAAGg -3'
miRNA:   3'- caAGU--UCCUGuUGCGGCCGU--GC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 35533 0.68 0.758101
Target:  5'- --gCAGGGcuucggccaagccGCGAugucgcuCGCCGGCGCGGGAa -3'
miRNA:   3'- caaGUUCC-------------UGUU-------GCGGCCGUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 35520 0.69 0.707232
Target:  5'- --aUAGGcGACAGCGCCGGC-CGuGAc- -3'
miRNA:   3'- caaGUUC-CUGUUGCGGCCGuGC-CUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.