miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 3' -53.3 NC_005262.1 + 10247 0.66 0.837387
Target:  5'- --aCAAGGACAAgGCgagCGGCGacaucaaGGAGGc -3'
miRNA:   3'- caaGUUCCUGUUgCG---GCCGUg------CCUUC- -5'
24077 3' -53.3 NC_005262.1 + 32216 0.68 0.739308
Target:  5'- cUUCAAGGGCGGCcUCGGCAUGa--- -3'
miRNA:   3'- cAAGUUCCUGUUGcGGCCGUGCcuuc -5'
24077 3' -53.3 NC_005262.1 + 50806 0.68 0.749796
Target:  5'- --cCGAGGGCAuggagcgcuucGCGCCGGagACGGGc- -3'
miRNA:   3'- caaGUUCCUGU-----------UGCGGCCg-UGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 35533 0.68 0.758101
Target:  5'- --gCAGGGcuucggccaagccGCGAugucgcuCGCCGGCGCGGGAa -3'
miRNA:   3'- caaGUUCC-------------UGUU-------GCGGCCGUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 29877 0.68 0.760164
Target:  5'- --aCGAGGA--GCGCgCGGCGCuucaGGAAGa -3'
miRNA:   3'- caaGUUCCUguUGCG-GCCGUG----CCUUC- -5'
24077 3' -53.3 NC_005262.1 + 48726 0.68 0.760164
Target:  5'- cGUUCuGGGACAACGUguCGGauguCGGGAa -3'
miRNA:   3'- -CAAGuUCCUGUUGCG--GCCgu--GCCUUc -5'
24077 3' -53.3 NC_005262.1 + 45438 0.68 0.760164
Target:  5'- -cUUAuGGGCGGgcucggaaccauCGCCGGCGCGGGc- -3'
miRNA:   3'- caAGUuCCUGUU------------GCGGCCGUGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 62664 0.67 0.774454
Target:  5'- -gUCGGGGGuggguuuaguccgccCGGCGgCGGCAgGGGAGc -3'
miRNA:   3'- caAGUUCCU---------------GUUGCgGCCGUgCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 59299 0.66 0.819189
Target:  5'- --aCGAGGAC-AUGCCGG-ACGGcGGc -3'
miRNA:   3'- caaGUUCCUGuUGCGGCCgUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 55069 0.68 0.718014
Target:  5'- -aUgGAGGA--GCGCCGGCugGGc-- -3'
miRNA:   3'- caAgUUCCUguUGCGGCCGugCCuuc -5'
24077 3' -53.3 NC_005262.1 + 57479 0.68 0.718014
Target:  5'- -gUCGAGGGCGAgaaGCCGGC-CGacGAGGc -3'
miRNA:   3'- caAGUUCCUGUUg--CGGCCGuGC--CUUC- -5'
24077 3' -53.3 NC_005262.1 + 57037 0.69 0.652434
Target:  5'- cUUCAAGGAgcugGCCGGCAaGGAGGc -3'
miRNA:   3'- cAAGUUCCUguugCGGCCGUgCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 53466 0.75 0.348527
Target:  5'- -gUCGAGGACAACGgcgugaaguggcUCGGCACGGccGa -3'
miRNA:   3'- caAGUUCCUGUUGC------------GGCCGUGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 58560 0.71 0.550155
Target:  5'- --cCAAGGcgGCGagaagcugaucggcACGCCGGCAUGGAAu -3'
miRNA:   3'- caaGUUCC--UGU--------------UGCGGCCGUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 60552 0.71 0.575182
Target:  5'- --gCAAGGGCAcgcugacgccgGCGCuCGGCGCGGu-- -3'
miRNA:   3'- caaGUUCCUGU-----------UGCG-GCCGUGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 30074 0.71 0.575182
Target:  5'- --gCGAcGACGACGCCGGCAa-GAAGg -3'
miRNA:   3'- caaGUUcCUGUUGCGGCCGUgcCUUC- -5'
24077 3' -53.3 NC_005262.1 + 12796 0.7 0.61924
Target:  5'- cGUgagCAuuGGGCGGCgcgcaGCCGGCGCGuGAAGa -3'
miRNA:   3'- -CAa--GUu-CCUGUUG-----CGGCCGUGC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 29941 0.7 0.61924
Target:  5'- -cUgAAGGACGAC-CCGGaCGCGGgcGg -3'
miRNA:   3'- caAgUUCCUGUUGcGGCC-GUGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 34295 0.69 0.652434
Target:  5'- -gUCgAAGGACAGCGaguucgcgaaCGGCACGGucGc -3'
miRNA:   3'- caAG-UUCCUGUUGCg---------GCCGUGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 17459 0.69 0.652434
Target:  5'- cGUUCGAGGACuuCGCCGaGUuccaGGAc- -3'
miRNA:   3'- -CAAGUUCCUGuuGCGGC-CGug--CCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.