miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 3' -53.3 NC_005262.1 + 5580 0.66 0.863027
Target:  5'- aGUUCGugguacGGGCGGCGCCgcucuccgcaGGCgacGCGGAAa -3'
miRNA:   3'- -CAAGUu-----CCUGUUGCGG----------CCG---UGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 178 0.7 0.630307
Target:  5'- aGUUCGGcucGGACGgcuucaugguccACGCCGGCGgGGgcGg -3'
miRNA:   3'- -CAAGUU---CCUGU------------UGCGGCCGUgCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 35520 0.69 0.707232
Target:  5'- --aUAGGcGACAGCGCCGGC-CGuGAc- -3'
miRNA:   3'- caaGUUC-CUGUUGCGGCCGuGC-CUuc -5'
24077 3' -53.3 NC_005262.1 + 17321 0.68 0.718014
Target:  5'- -gUCGAcGGGCugcgucGugGCCGGCGCGGc-- -3'
miRNA:   3'- caAGUU-CCUG------UugCGGCCGUGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 17351 0.67 0.7704
Target:  5'- aUUCGGGucCGGCGCgggCGGCGCGGcGGg -3'
miRNA:   3'- cAAGUUCcuGUUGCG---GCCGUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 14012 0.67 0.800195
Target:  5'- --gCAGGGGCGu--CCGGCGCGGcAGc -3'
miRNA:   3'- caaGUUCCUGUugcGGCCGUGCCuUC- -5'
24077 3' -53.3 NC_005262.1 + 13784 0.76 0.316089
Target:  5'- cUUCAcuucGGugGGCGCCGGCGCGGc-- -3'
miRNA:   3'- cAAGUu---CCugUUGCGGCCGUGCCuuc -5'
24077 3' -53.3 NC_005262.1 + 39248 0.71 0.586147
Target:  5'- -aUCAgcAGGAUcACGCCGGCGauCGcGAAGg -3'
miRNA:   3'- caAGU--UCCUGuUGCGGCCGU--GC-CUUC- -5'
24077 3' -53.3 NC_005262.1 + 5011 0.69 0.674486
Target:  5'- -gUCGucGACccAGCGCCGGaaCGCGGAGGg -3'
miRNA:   3'- caAGUucCUG--UUGCGGCC--GUGCCUUC- -5'
24077 3' -53.3 NC_005262.1 + 29040 0.68 0.749796
Target:  5'- -cUCGA--GCGGCGCCGGCACGa--- -3'
miRNA:   3'- caAGUUccUGUUGCGGCCGUGCcuuc -5'
24077 3' -53.3 NC_005262.1 + 18053 0.66 0.854713
Target:  5'- cGUUCGcGGGaACGAUGUCGG-ACGGGAu -3'
miRNA:   3'- -CAAGU-UCC-UGUUGCGGCCgUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 13518 0.71 0.575182
Target:  5'- -gUCAcGGGCucgGCCGGCGCGGGc- -3'
miRNA:   3'- caAGUuCCUGuugCGGCCGUGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 60250 0.66 0.828392
Target:  5'- -gUCAAGGccGCGauACGCCGGCAgugucaggggUGGAu- -3'
miRNA:   3'- caAGUUCC--UGU--UGCGGCCGU----------GCCUuc -5'
24077 3' -53.3 NC_005262.1 + 62317 0.69 0.696376
Target:  5'- --gCAGcGGCAGCGCCGGCagacgaGCGGgcGg -3'
miRNA:   3'- caaGUUcCUGUUGCGGCCG------UGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 17215 0.72 0.500179
Target:  5'- --gCGAGGACGGCGCUGGCGuCGuGGu- -3'
miRNA:   3'- caaGUUCCUGUUGCGGCCGU-GC-CUuc -5'
24077 3' -53.3 NC_005262.1 + 32206 0.66 0.819189
Target:  5'- -gUCgAAGGugAugcgauCGCCGGCGuCGGAu- -3'
miRNA:   3'- caAG-UUCCugUu-----GCGGCCGU-GCCUuc -5'
24077 3' -53.3 NC_005262.1 + 34127 0.7 0.61924
Target:  5'- gGUUgGGcGGGCuGCGCgGGCGCGGgcGg -3'
miRNA:   3'- -CAAgUU-CCUGuUGCGgCCGUGCCuuC- -5'
24077 3' -53.3 NC_005262.1 + 35533 0.68 0.758101
Target:  5'- --gCAGGGcuucggccaagccGCGAugucgcuCGCCGGCGCGGGAa -3'
miRNA:   3'- caaGUUCC-------------UGUU-------GCGGCCGUGCCUUc -5'
24077 3' -53.3 NC_005262.1 + 50806 0.68 0.749796
Target:  5'- --cCGAGGGCAuggagcgcuucGCGCCGGagACGGGc- -3'
miRNA:   3'- caaGUUCCUGU-----------UGCGGCCg-UGCCUuc -5'
24077 3' -53.3 NC_005262.1 + 32216 0.68 0.739308
Target:  5'- cUUCAAGGGCGGCcUCGGCAUGa--- -3'
miRNA:   3'- cAAGUUCCUGUUGcGGCCGUGCcuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.