miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 5' -62.7 NC_005262.1 + 8004 0.66 0.374925
Target:  5'- aUCaCUCCGGAGGCGgcaaaGGCccuCCGGCu- -3'
miRNA:   3'- aAG-GAGGUCUUCGCg----CCGc--GGCCGca -5'
24077 5' -62.7 NC_005262.1 + 12643 0.66 0.374085
Target:  5'- -aCCgugaAGAAgaagcgcGCGCGGCGCgCGGCGa -3'
miRNA:   3'- aaGGagg-UCUU-------CGCGCCGCG-GCCGCa -5'
24077 5' -62.7 NC_005262.1 + 49638 0.66 0.374085
Target:  5'- --aCUCCuc-GGCGCGGCGgacaaucCCGGCGc -3'
miRNA:   3'- aagGAGGucuUCGCGCCGC-------GGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 29296 0.66 0.358381
Target:  5'- -gUCUCgCAGAAGuCGCGcGcCGCCGcGCGg -3'
miRNA:   3'- aaGGAG-GUCUUC-GCGC-C-GCGGC-CGCa -5'
24077 5' -62.7 NC_005262.1 + 38532 0.66 0.358381
Target:  5'- gUUgCggugCCAGAggcGGCGCaGGaGCCGGCGUu -3'
miRNA:   3'- -AAgGa---GGUCU---UCGCG-CCgCGGCCGCA- -5'
24077 5' -62.7 NC_005262.1 + 22029 0.66 0.358381
Target:  5'- gUUCUCguGcgcuGCGcCGGUGCCGGCa- -3'
miRNA:   3'- aAGGAGguCuu--CGC-GCCGCGGCCGca -5'
24077 5' -62.7 NC_005262.1 + 25449 0.66 0.342355
Target:  5'- -aCCUgCCcGAGGCGCuGCGCgaGGCGa -3'
miRNA:   3'- aaGGA-GGuCUUCGCGcCGCGg-CCGCa -5'
24077 5' -62.7 NC_005262.1 + 6875 0.66 0.342355
Target:  5'- -gCUUCUc-GAGCGCGGCcuugaucucGCCGGCGa -3'
miRNA:   3'- aaGGAGGucUUCGCGCCG---------CGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 13499 0.66 0.333763
Target:  5'- cUCCUCaauccGCGCGGCcgucacgggcucgGCCGGCGc -3'
miRNA:   3'- aAGGAGgucuuCGCGCCG-------------CGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 35071 0.67 0.311876
Target:  5'- -gCgUCCGGgcGCGCGGCcuCgCGGCGg -3'
miRNA:   3'- aaGgAGGUCuuCGCGCCGc-G-GCCGCa -5'
24077 5' -62.7 NC_005262.1 + 9359 0.67 0.304586
Target:  5'- -aCUUCCGGucGGCGCGcGCGgCGGCc- -3'
miRNA:   3'- aaGGAGGUCu-UCGCGC-CGCgGCCGca -5'
24077 5' -62.7 NC_005262.1 + 42107 0.67 0.303864
Target:  5'- -cCCgcguaCAGcAGCGCGGCGCCGccgcucagguugcGCGUg -3'
miRNA:   3'- aaGGag---GUCuUCGCGCCGCGGC-------------CGCA- -5'
24077 5' -62.7 NC_005262.1 + 11077 0.67 0.302424
Target:  5'- cUUCgUCAGcAGCGCGGCcucguccggcgucgGCCGGCGg -3'
miRNA:   3'- aAGGaGGUCuUCGCGCCG--------------CGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 16342 0.67 0.296718
Target:  5'- aUCCUCUGGcucGGCGCgcugaucGGCGCCGccGCGUu -3'
miRNA:   3'- aAGGAGGUCu--UCGCG-------CCGCGGC--CGCA- -5'
24077 5' -62.7 NC_005262.1 + 62305 0.67 0.2904
Target:  5'- -cCCUCCgcAGAugcAGCgGCaGCGCCGGCa- -3'
miRNA:   3'- aaGGAGG--UCU---UCG-CGcCGCGGCCGca -5'
24077 5' -62.7 NC_005262.1 + 20736 0.67 0.2904
Target:  5'- -gCUgCCGcGgcGCGCGGUGCCGGCc- -3'
miRNA:   3'- aaGGaGGU-CuuCGCGCCGCGGCCGca -5'
24077 5' -62.7 NC_005262.1 + 38419 0.67 0.2904
Target:  5'- -aCCaUCCAGGccGGCGCGGUcgagaucacGCCGGaCGa -3'
miRNA:   3'- aaGG-AGGUCU--UCGCGCCG---------CGGCC-GCa -5'
24077 5' -62.7 NC_005262.1 + 54421 0.67 0.2904
Target:  5'- --gCUCgCGGAGGCGCaGGcCGCCGcGCGc -3'
miRNA:   3'- aagGAG-GUCUUCGCG-CC-GCGGC-CGCa -5'
24077 5' -62.7 NC_005262.1 + 61609 0.67 0.288317
Target:  5'- -aCCgagCAGAAGCGCGcGCGCCugaaggagcucgagGGCGa -3'
miRNA:   3'- aaGGag-GUCUUCGCGC-CGCGG--------------CCGCa -5'
24077 5' -62.7 NC_005262.1 + 33916 0.68 0.276736
Target:  5'- aUCUUCCuGAAGCGcCGGCGCUccucgucggucaGGCc- -3'
miRNA:   3'- aAGGAGGuCUUCGC-GCCGCGG------------CCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.