Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24077 | 5' | -62.7 | NC_005262.1 | + | 53441 | 1.04 | 0.000491 |
Target: 5'- gUUCCUCCAGAAGCGCGGCGCCGGCGUc -3' miRNA: 3'- -AAGGAGGUCUUCGCGCCGCGGCCGCA- -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 32170 | 0.78 | 0.052054 |
Target: 5'- -aCUUCCAGAAG-GCGGCGgCGGCGg -3' miRNA: 3'- aaGGAGGUCUUCgCGCCGCgGCCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 20165 | 0.77 | 0.061493 |
Target: 5'- cUCCUgCCAGuucuGCGcCGGUGCCGGCGa -3' miRNA: 3'- aAGGA-GGUCuu--CGC-GCCGCGGCCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 36797 | 0.73 | 0.121671 |
Target: 5'- aUUCCUCC---AGUGCGGCGCgcuCGGCGg -3' miRNA: 3'- -AAGGAGGucuUCGCGCCGCG---GCCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 52381 | 0.72 | 0.135374 |
Target: 5'- -aCCUUCGGcggcccGGCGCGGCGCggcuuCGGCGUg -3' miRNA: 3'- aaGGAGGUCu-----UCGCGCCGCG-----GCCGCA- -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 11631 | 0.72 | 0.142746 |
Target: 5'- -cCCUgcaCCAucGGCucgGCGGCGCCGGCGUc -3' miRNA: 3'- aaGGA---GGUcuUCG---CGCCGCGGCCGCA- -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 2624 | 0.72 | 0.145028 |
Target: 5'- cUCCUcgauacccuugaCCAGAucggcccaugccuGCGCGGCGCCgGGCGg -3' miRNA: 3'- aAGGA------------GGUCUu------------CGCGCCGCGG-CCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 13751 | 0.71 | 0.150483 |
Target: 5'- cUUCgUCuCGGGAGCaGcCGGCGCCGGCu- -3' miRNA: 3'- -AAGgAG-GUCUUCG-C-GCCGCGGCCGca -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 3459 | 0.71 | 0.1586 |
Target: 5'- gUCCUUCAGGuAGcCGCGcGCGCCguaGGCGUc -3' miRNA: 3'- aAGGAGGUCU-UC-GCGC-CGCGG---CCGCA- -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 15099 | 0.7 | 0.180643 |
Target: 5'- gUCUUUCuGcGGCGCGGCGuCCGGCu- -3' miRNA: 3'- aAGGAGGuCuUCGCGCCGC-GGCCGca -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 14020 | 0.7 | 0.193148 |
Target: 5'- gUCCggcgcggcagcggCCGGAgccucgGGCGCGGgcgcCGCCGGCGUc -3' miRNA: 3'- aAGGa------------GGUCU------UCGCGCC----GCGGCCGCA- -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 58962 | 0.7 | 0.199681 |
Target: 5'- aUCCaCCGGAAaggcacuGCGUcGCGCCGGCGa -3' miRNA: 3'- aAGGaGGUCUU-------CGCGcCGCGGCCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 4649 | 0.7 | 0.205358 |
Target: 5'- gUCCUCCAugcGCGCGGCGaCgCGGCc- -3' miRNA: 3'- aAGGAGGUcuuCGCGCCGC-G-GCCGca -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 21546 | 0.69 | 0.21064 |
Target: 5'- -gCCg-CAGuGAGCGCGGCGCuCGGCa- -3' miRNA: 3'- aaGGagGUC-UUCGCGCCGCG-GCCGca -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 46879 | 0.69 | 0.216039 |
Target: 5'- cUCCUUCAuguGGugcGGUGCGGUGCgGGCGg -3' miRNA: 3'- aAGGAGGU---CU---UCGCGCCGCGgCCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 38898 | 0.69 | 0.220998 |
Target: 5'- gUCCUCCGGcuggccGAGCuCGccuucacGCGCCGGCGg -3' miRNA: 3'- aAGGAGGUC------UUCGcGC-------CGCGGCCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 28151 | 0.69 | 0.221555 |
Target: 5'- aUCUUCCccGAGcGCGCGGCGCaacugcgcgCGGCGg -3' miRNA: 3'- aAGGAGGu-CUU-CGCGCCGCG---------GCCGCa -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 19116 | 0.69 | 0.221555 |
Target: 5'- -aCgUUCGGAucgGGCGCGGgcgcguCGCCGGCGUc -3' miRNA: 3'- aaGgAGGUCU---UCGCGCC------GCGGCCGCA- -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 46527 | 0.69 | 0.238827 |
Target: 5'- -cCCgCgCAGcagcccAGCGCGGCGCCGGCc- -3' miRNA: 3'- aaGGaG-GUCu-----UCGCGCCGCGGCCGca -5' |
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24077 | 5' | -62.7 | NC_005262.1 | + | 40863 | 0.68 | 0.24483 |
Target: 5'- -cCCUCgCGcGGAGCaUGGCGUCGGCGa -3' miRNA: 3'- aaGGAG-GU-CUUCGcGCCGCGGCCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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