miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 5' -62.7 NC_005262.1 + 2624 0.72 0.145028
Target:  5'- cUCCUcgauacccuugaCCAGAucggcccaugccuGCGCGGCGCCgGGCGg -3'
miRNA:   3'- aAGGA------------GGUCUu------------CGCGCCGCGG-CCGCa -5'
24077 5' -62.7 NC_005262.1 + 3459 0.71 0.1586
Target:  5'- gUCCUUCAGGuAGcCGCGcGCGCCguaGGCGUc -3'
miRNA:   3'- aAGGAGGUCU-UC-GCGC-CGCGG---CCGCA- -5'
24077 5' -62.7 NC_005262.1 + 4649 0.7 0.205358
Target:  5'- gUCCUCCAugcGCGCGGCGaCgCGGCc- -3'
miRNA:   3'- aAGGAGGUcuuCGCGCCGC-G-GCCGca -5'
24077 5' -62.7 NC_005262.1 + 6875 0.66 0.342355
Target:  5'- -gCUUCUc-GAGCGCGGCcuugaucucGCCGGCGa -3'
miRNA:   3'- aaGGAGGucUUCGCGCCG---------CGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 8004 0.66 0.374925
Target:  5'- aUCaCUCCGGAGGCGgcaaaGGCccuCCGGCu- -3'
miRNA:   3'- aAG-GAGGUCUUCGCg----CCGc--GGCCGca -5'
24077 5' -62.7 NC_005262.1 + 9359 0.67 0.304586
Target:  5'- -aCUUCCGGucGGCGCGcGCGgCGGCc- -3'
miRNA:   3'- aaGGAGGUCu-UCGCGC-CGCgGCCGca -5'
24077 5' -62.7 NC_005262.1 + 11077 0.67 0.302424
Target:  5'- cUUCgUCAGcAGCGCGGCcucguccggcgucgGCCGGCGg -3'
miRNA:   3'- aAGGaGGUCuUCGCGCCG--------------CGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 11631 0.72 0.142746
Target:  5'- -cCCUgcaCCAucGGCucgGCGGCGCCGGCGUc -3'
miRNA:   3'- aaGGA---GGUcuUCG---CGCCGCGGCCGCA- -5'
24077 5' -62.7 NC_005262.1 + 11747 0.68 0.257211
Target:  5'- -aCC-CCGGAcuCGauguaGGCGCCGGCGa -3'
miRNA:   3'- aaGGaGGUCUucGCg----CCGCGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 12643 0.66 0.374085
Target:  5'- -aCCgugaAGAAgaagcgcGCGCGGCGCgCGGCGa -3'
miRNA:   3'- aaGGagg-UCUU-------CGCGCCGCG-GCCGCa -5'
24077 5' -62.7 NC_005262.1 + 13353 0.68 0.250957
Target:  5'- -cCCUCUcGAAGCGCuGCGCCaGCa- -3'
miRNA:   3'- aaGGAGGuCUUCGCGcCGCGGcCGca -5'
24077 5' -62.7 NC_005262.1 + 13499 0.66 0.333763
Target:  5'- cUCCUCaauccGCGCGGCcgucacgggcucgGCCGGCGc -3'
miRNA:   3'- aAGGAGgucuuCGCGCCG-------------CGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 13751 0.71 0.150483
Target:  5'- cUUCgUCuCGGGAGCaGcCGGCGCCGGCu- -3'
miRNA:   3'- -AAGgAG-GUCUUCG-C-GCCGCGGCCGca -5'
24077 5' -62.7 NC_005262.1 + 14020 0.7 0.193148
Target:  5'- gUCCggcgcggcagcggCCGGAgccucgGGCGCGGgcgcCGCCGGCGUc -3'
miRNA:   3'- aAGGa------------GGUCU------UCGCGCC----GCGGCCGCA- -5'
24077 5' -62.7 NC_005262.1 + 15099 0.7 0.180643
Target:  5'- gUCUUUCuGcGGCGCGGCGuCCGGCu- -3'
miRNA:   3'- aAGGAGGuCuUCGCGCCGC-GGCCGca -5'
24077 5' -62.7 NC_005262.1 + 16342 0.67 0.296718
Target:  5'- aUCCUCUGGcucGGCGCgcugaucGGCGCCGccGCGUu -3'
miRNA:   3'- aAGGAGGUCu--UCGCG-------CCGCGGC--CGCA- -5'
24077 5' -62.7 NC_005262.1 + 19116 0.69 0.221555
Target:  5'- -aCgUUCGGAucgGGCGCGGgcgcguCGCCGGCGUc -3'
miRNA:   3'- aaGgAGGUCU---UCGCGCC------GCGGCCGCA- -5'
24077 5' -62.7 NC_005262.1 + 20165 0.77 0.061493
Target:  5'- cUCCUgCCAGuucuGCGcCGGUGCCGGCGa -3'
miRNA:   3'- aAGGA-GGUCuu--CGC-GCCGCGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 20736 0.67 0.2904
Target:  5'- -gCUgCCGcGgcGCGCGGUGCCGGCc- -3'
miRNA:   3'- aaGGaGGU-CuuCGCGCCGCGGCCGca -5'
24077 5' -62.7 NC_005262.1 + 21546 0.69 0.21064
Target:  5'- -gCCg-CAGuGAGCGCGGCGCuCGGCa- -3'
miRNA:   3'- aaGGagGUC-UUCGCGCCGCG-GCCGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.