miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24077 5' -62.7 NC_005262.1 + 62305 0.67 0.2904
Target:  5'- -cCCUCCgcAGAugcAGCgGCaGCGCCGGCa- -3'
miRNA:   3'- aaGGAGG--UCU---UCG-CGcCGCGGCCGca -5'
24077 5' -62.7 NC_005262.1 + 61609 0.67 0.288317
Target:  5'- -aCCgagCAGAAGCGCGcGCGCCugaaggagcucgagGGCGa -3'
miRNA:   3'- aaGGag-GUCUUCGCGC-CGCGG--------------CCGCa -5'
24077 5' -62.7 NC_005262.1 + 58962 0.7 0.199681
Target:  5'- aUCCaCCGGAAaggcacuGCGUcGCGCCGGCGa -3'
miRNA:   3'- aAGGaGGUCUU-------CGCGcCGCGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 54421 0.67 0.2904
Target:  5'- --gCUCgCGGAGGCGCaGGcCGCCGcGCGc -3'
miRNA:   3'- aagGAG-GUCUUCGCG-CC-GCGGC-CGCa -5'
24077 5' -62.7 NC_005262.1 + 53441 1.04 0.000491
Target:  5'- gUUCCUCCAGAAGCGCGGCGCCGGCGUc -3'
miRNA:   3'- -AAGGAGGUCUUCGCGCCGCGGCCGCA- -5'
24077 5' -62.7 NC_005262.1 + 52381 0.72 0.135374
Target:  5'- -aCCUUCGGcggcccGGCGCGGCGCggcuuCGGCGUg -3'
miRNA:   3'- aaGGAGGUCu-----UCGCGCCGCG-----GCCGCA- -5'
24077 5' -62.7 NC_005262.1 + 52139 0.68 0.276736
Target:  5'- -gCCggCCAGcgugcAGCGCGaCGCCGGCGc -3'
miRNA:   3'- aaGGa-GGUCu----UCGCGCcGCGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 49638 0.66 0.374085
Target:  5'- --aCUCCuc-GGCGCGGCGgacaaucCCGGCGc -3'
miRNA:   3'- aagGAGGucuUCGCGCCGC-------GGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 46879 0.69 0.216039
Target:  5'- cUCCUUCAuguGGugcGGUGCGGUGCgGGCGg -3'
miRNA:   3'- aAGGAGGU---CU---UCGCGCCGCGgCCGCa -5'
24077 5' -62.7 NC_005262.1 + 46527 0.69 0.238827
Target:  5'- -cCCgCgCAGcagcccAGCGCGGCGCCGGCc- -3'
miRNA:   3'- aaGGaG-GUCu-----UCGCGCCGCGGCCGca -5'
24077 5' -62.7 NC_005262.1 + 42107 0.67 0.303864
Target:  5'- -cCCgcguaCAGcAGCGCGGCGCCGccgcucagguugcGCGUg -3'
miRNA:   3'- aaGGag---GUCuUCGCGCCGCGGC-------------CGCA- -5'
24077 5' -62.7 NC_005262.1 + 40863 0.68 0.24483
Target:  5'- -cCCUCgCGcGGAGCaUGGCGUCGGCGa -3'
miRNA:   3'- aaGGAG-GU-CUUCGcGCCGCGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 38898 0.69 0.220998
Target:  5'- gUCCUCCGGcuggccGAGCuCGccuucacGCGCCGGCGg -3'
miRNA:   3'- aAGGAGGUC------UUCGcGC-------CGCGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 38532 0.66 0.358381
Target:  5'- gUUgCggugCCAGAggcGGCGCaGGaGCCGGCGUu -3'
miRNA:   3'- -AAgGa---GGUCU---UCGCG-CCgCGGCCGCA- -5'
24077 5' -62.7 NC_005262.1 + 38419 0.67 0.2904
Target:  5'- -aCCaUCCAGGccGGCGCGGUcgagaucacGCCGGaCGa -3'
miRNA:   3'- aaGG-AGGUCU--UCGCGCCG---------CGGCC-GCa -5'
24077 5' -62.7 NC_005262.1 + 36797 0.73 0.121671
Target:  5'- aUUCCUCC---AGUGCGGCGCgcuCGGCGg -3'
miRNA:   3'- -AAGGAGGucuUCGCGCCGCG---GCCGCa -5'
24077 5' -62.7 NC_005262.1 + 35071 0.67 0.311876
Target:  5'- -gCgUCCGGgcGCGCGGCcuCgCGGCGg -3'
miRNA:   3'- aaGgAGGUCuuCGCGCCGc-G-GCCGCa -5'
24077 5' -62.7 NC_005262.1 + 33916 0.68 0.276736
Target:  5'- aUCUUCCuGAAGCGcCGGCGCUccucgucggucaGGCc- -3'
miRNA:   3'- aAGGAGGuCUUCGC-GCCGCGG------------CCGca -5'
24077 5' -62.7 NC_005262.1 + 33634 0.68 0.250957
Target:  5'- cUCCUUCAGcuucGCGuCGGCauccGCCGGCGc -3'
miRNA:   3'- aAGGAGGUCuu--CGC-GCCG----CGGCCGCa -5'
24077 5' -62.7 NC_005262.1 + 32900 0.68 0.263591
Target:  5'- aUCCUCgAGcgcGAGCGgcgucaccaucCGGcCGCCGGCGa -3'
miRNA:   3'- aAGGAGgUC---UUCGC-----------GCC-GCGGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.