miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 48496 0.66 0.828564
Target:  5'- cGGCGCGACggcagccgCAgguaacagcgcGCUCGACCUGCAAu -3'
miRNA:   3'- cUUGCGCUGaa------GU-----------UGGGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 58906 0.66 0.828564
Target:  5'- -uGCGCGAUcaggccggCGGCCCGACCgAUg- -3'
miRNA:   3'- cuUGCGCUGaa------GUUGGGCUGGgUGuu -5'
24078 3' -53.7 NC_005262.1 + 30294 0.66 0.828564
Target:  5'- cGAGCGCG-CUgUCGACaaGGCCCAgAc -3'
miRNA:   3'- -CUUGCGCuGA-AGUUGggCUGGGUgUu -5'
24078 3' -53.7 NC_005262.1 + 3140 0.66 0.828564
Target:  5'- cGAGCGCGAUga-GugCUuGCCCGCGGu -3'
miRNA:   3'- -CUUGCGCUGaagUugGGcUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 47195 0.66 0.828564
Target:  5'- aAACGCGGCUgcuUCGccGCCuCGACCagCACAc -3'
miRNA:   3'- cUUGCGCUGA---AGU--UGG-GCUGG--GUGUu -5'
24078 3' -53.7 NC_005262.1 + 56114 0.66 0.819323
Target:  5'- -cAUGCGuuucgUCGACCCGACCgCGCc- -3'
miRNA:   3'- cuUGCGCuga--AGUUGGGCUGG-GUGuu -5'
24078 3' -53.7 NC_005262.1 + 47343 0.66 0.819323
Target:  5'- --gUGCGAUUUCGACUCGuuucuuuUCCACAGu -3'
miRNA:   3'- cuuGCGCUGAAGUUGGGCu------GGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 55013 0.66 0.819323
Target:  5'- cGAGCGgGACUcgcgaucgaUCAAgCCGGuguCCCACGc -3'
miRNA:   3'- -CUUGCgCUGA---------AGUUgGGCU---GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 62214 0.66 0.817451
Target:  5'- cGAACGCGACgaaaucuugcacUCGAUUCGAgCCUACGc -3'
miRNA:   3'- -CUUGCGCUGa-----------AGUUGGGCU-GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 8154 0.66 0.809882
Target:  5'- cGGACGCGGCcacgagcgcgCGGCCCGGCUucuugcugCGCAGg -3'
miRNA:   3'- -CUUGCGCUGaa--------GUUGGGCUGG--------GUGUU- -5'
24078 3' -53.7 NC_005262.1 + 61583 0.66 0.809882
Target:  5'- ---aGCGGCUUCGACgCGAUgugCCGCGc -3'
miRNA:   3'- cuugCGCUGAAGUUGgGCUG---GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 59795 0.66 0.809882
Target:  5'- cAACGCGuuCcUCGaggGCaCCGGCCCGCAGg -3'
miRNA:   3'- cUUGCGCu-GaAGU---UG-GGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 59167 0.66 0.809882
Target:  5'- aGGACGCGAagaagCAGCUCacgGGCCCGCu- -3'
miRNA:   3'- -CUUGCGCUgaa--GUUGGG---CUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 23369 0.66 0.809882
Target:  5'- -cGCGCGGCggCGAa--GGCCCGCAAc -3'
miRNA:   3'- cuUGCGCUGaaGUUgggCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 15248 0.66 0.809882
Target:  5'- cAACGUu-CUUCgGGCCCGGCCUGCAc -3'
miRNA:   3'- cUUGCGcuGAAG-UUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 21649 0.66 0.800251
Target:  5'- --cCGCGACcg-GGCCCGGCgCCGCGu -3'
miRNA:   3'- cuuGCGCUGaagUUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 37173 0.66 0.800251
Target:  5'- -uACGCGggcGCUUCGAUuuG-CCCGCGGg -3'
miRNA:   3'- cuUGCGC---UGAAGUUGggCuGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 20110 0.67 0.780461
Target:  5'- -cGCGCGAaUUCGGCCCGGCUUg--- -3'
miRNA:   3'- cuUGCGCUgAAGUUGGGCUGGGuguu -5'
24078 3' -53.7 NC_005262.1 + 59453 0.67 0.780461
Target:  5'- cGAuCGCGACggcCGAUggaCGGCCCGCGAg -3'
miRNA:   3'- -CUuGCGCUGaa-GUUGg--GCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 52813 0.67 0.770325
Target:  5'- cGAGCGCGACcggCGuuCCCGGCgCGCc- -3'
miRNA:   3'- -CUUGCGCUGaa-GUu-GGGCUGgGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.