miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 30926 0.67 0.760044
Target:  5'- cGACGCGGCgaacGCUCGGCgCCGCAc -3'
miRNA:   3'- cUUGCGCUGaaguUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 40380 0.67 0.749629
Target:  5'- uGACGCGGC-UCAugCUG-CCCGCc- -3'
miRNA:   3'- cUUGCGCUGaAGUugGGCuGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 13509 0.67 0.739093
Target:  5'- -cGCGCGGCcgUCAcggGCUCGGCCgGCGc -3'
miRNA:   3'- cuUGCGCUGa-AGU---UGGGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 52813 0.67 0.770325
Target:  5'- cGAGCGCGACcggCGuuCCCGGCgCGCc- -3'
miRNA:   3'- -CUUGCGCUGaa-GUu-GGGCUGgGUGuu -5'
24078 3' -53.7 NC_005262.1 + 18878 0.67 0.749629
Target:  5'- gGAGCaGCGcCUUgcgccgcaucCAGuCCCGACCCACGg -3'
miRNA:   3'- -CUUG-CGCuGAA----------GUU-GGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 39199 0.67 0.728446
Target:  5'- gGGAUGCcggcaACUUCGAUCCGGCCaGCAAg -3'
miRNA:   3'- -CUUGCGc----UGAAGUUGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 12847 0.68 0.70687
Target:  5'- -uGCGuCGGCUUCAGCUcggCGGCCgGCAc -3'
miRNA:   3'- cuUGC-GCUGAAGUUGG---GCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 19283 0.68 0.695964
Target:  5'- cAGCGCGGCgaUCAGgCUGGCCCAgAu -3'
miRNA:   3'- cUUGCGCUGa-AGUUgGGCUGGGUgUu -5'
24078 3' -53.7 NC_005262.1 + 41927 0.68 0.695964
Target:  5'- -uGCGCGgucgGCUUCAGCgCCGAUCCcuGCAc -3'
miRNA:   3'- cuUGCGC----UGAAGUUG-GGCUGGG--UGUu -5'
24078 3' -53.7 NC_005262.1 + 63047 0.68 0.684995
Target:  5'- cGAGCGCGugUUCAcgaccguUCCGACgCAUAc -3'
miRNA:   3'- -CUUGCGCugAAGUu------GGGCUGgGUGUu -5'
24078 3' -53.7 NC_005262.1 + 60528 0.68 0.70687
Target:  5'- aGAGCGUGACggUCGACuUCGACC-GCAAg -3'
miRNA:   3'- -CUUGCGCUGa-AGUUG-GGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 49644 0.68 0.695964
Target:  5'- cGGCGCGGCggaCAAuCCCGGCgCACGc -3'
miRNA:   3'- cUUGCGCUGaa-GUU-GGGCUGgGUGUu -5'
24078 3' -53.7 NC_005262.1 + 1053 0.68 0.673975
Target:  5'- aGGCGCGA--UCGGCCCGgaGCCgACAAa -3'
miRNA:   3'- cUUGCGCUgaAGUUGGGC--UGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 53156 0.68 0.70687
Target:  5'- cGACGCGGCgaucggCAACCCG-CCCuucGCGu -3'
miRNA:   3'- cUUGCGCUGaa----GUUGGGCuGGG---UGUu -5'
24078 3' -53.7 NC_005262.1 + 36385 0.68 0.71446
Target:  5'- uGAAUGCGGCacugaaccccgacaUUCAACCUGugCCgGCAu -3'
miRNA:   3'- -CUUGCGCUG--------------AAGUUGGGCugGG-UGUu -5'
24078 3' -53.7 NC_005262.1 + 43915 0.69 0.651824
Target:  5'- cAGCGCGGCgcCAACCgCGGCCgACu- -3'
miRNA:   3'- cUUGCGCUGaaGUUGG-GCUGGgUGuu -5'
24078 3' -53.7 NC_005262.1 + 52399 0.69 0.629599
Target:  5'- cGGCGCGGCUUCGGCgUgGAgCCGCGc -3'
miRNA:   3'- cUUGCGCUGAAGUUG-GgCUgGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 4659 0.69 0.651824
Target:  5'- -cGCGCGGCgacgCGGCCCGGCCgGu-- -3'
miRNA:   3'- cuUGCGCUGaa--GUUGGGCUGGgUguu -5'
24078 3' -53.7 NC_005262.1 + 26953 0.69 0.662914
Target:  5'- --cCGCGACcaCAuCCCGACCgACGAa -3'
miRNA:   3'- cuuGCGCUGaaGUuGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 23066 0.7 0.596302
Target:  5'- cGACGCGAUaccgAACCCG-CCCGCAGg -3'
miRNA:   3'- cUUGCGCUGaag-UUGGGCuGGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.