miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 23066 0.7 0.596302
Target:  5'- cGACGCGAUaccgAACCCG-CCCGCAGg -3'
miRNA:   3'- cUUGCGCUGaag-UUGGGCuGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 29772 0.7 0.607382
Target:  5'- cGACGCGGCgcacgaugCGGCCCGGCgUCACGc -3'
miRNA:   3'- cUUGCGCUGaa------GUUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 58658 0.7 0.552379
Target:  5'- -cGCGCGAgUUCuacgaucaAGCCCGAgCCCGCGu -3'
miRNA:   3'- cuUGCGCUgAAG--------UUGGGCU-GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 35787 0.71 0.498967
Target:  5'- cGAGCGUucGACUUCAGCUCGAUaucgaCGCGAa -3'
miRNA:   3'- -CUUGCG--CUGAAGUUGGGCUGg----GUGUU- -5'
24078 3' -53.7 NC_005262.1 + 53342 0.71 0.530771
Target:  5'- --uCGCGGCUUCcGCCCGGCUUGCc- -3'
miRNA:   3'- cuuGCGCUGAAGuUGGGCUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 20339 0.71 0.498967
Target:  5'- ---aGCGGC-UCGACUCGAUCCGCAc -3'
miRNA:   3'- cuugCGCUGaAGUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 57018 0.71 0.498967
Target:  5'- cGGGCGCGAuCUUCAACCgcuucaaggagcUGGCCgGCAAg -3'
miRNA:   3'- -CUUGCGCU-GAAGUUGG------------GCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 51817 0.73 0.40934
Target:  5'- cGGCGaCGACUUCAGCgCGGCCgACGu -3'
miRNA:   3'- cUUGC-GCUGAAGUUGgGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 25211 0.73 0.408401
Target:  5'- cGAACGCGcacgccaaagcauGCUUCuuucAUCCGGCCCGCGg -3'
miRNA:   3'- -CUUGCGC-------------UGAAGu---UGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 40650 0.77 0.256596
Target:  5'- cGGGCaCGGCgucagCGACCCGACCCACGc -3'
miRNA:   3'- -CUUGcGCUGaa---GUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 53738 1.07 0.002283
Target:  5'- cGAACGCGACUUCAACCCGACCCACAAg -3'
miRNA:   3'- -CUUGCGCUGAAGUUGGGCUGGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.