miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 19283 0.68 0.695964
Target:  5'- cAGCGCGGCgaUCAGgCUGGCCCAgAu -3'
miRNA:   3'- cUUGCGCUGa-AGUUgGGCUGGGUgUu -5'
24078 3' -53.7 NC_005262.1 + 1053 0.68 0.673975
Target:  5'- aGGCGCGA--UCGGCCCGgaGCCgACAAa -3'
miRNA:   3'- cUUGCGCUgaAGUUGGGC--UGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 53156 0.68 0.70687
Target:  5'- cGACGCGGCgaucggCAACCCG-CCCuucGCGu -3'
miRNA:   3'- cUUGCGCUGaa----GUUGGGCuGGG---UGUu -5'
24078 3' -53.7 NC_005262.1 + 12847 0.68 0.70687
Target:  5'- -uGCGuCGGCUUCAGCUcggCGGCCgGCAc -3'
miRNA:   3'- cuUGC-GCUGAAGUUGG---GCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 36385 0.68 0.71446
Target:  5'- uGAAUGCGGCacugaaccccgacaUUCAACCUGugCCgGCAu -3'
miRNA:   3'- -CUUGCGCUG--------------AAGUUGGGCugGG-UGUu -5'
24078 3' -53.7 NC_005262.1 + 59453 0.67 0.780461
Target:  5'- cGAuCGCGACggcCGAUggaCGGCCCGCGAg -3'
miRNA:   3'- -CUuGCGCUGaa-GUUGg--GCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 20110 0.67 0.780461
Target:  5'- -cGCGCGAaUUCGGCCCGGCUUg--- -3'
miRNA:   3'- cuUGCGCUgAAGUUGGGCUGGGuguu -5'
24078 3' -53.7 NC_005262.1 + 52813 0.67 0.770325
Target:  5'- cGAGCGCGACcggCGuuCCCGGCgCGCc- -3'
miRNA:   3'- -CUUGCGCUGaa-GUu-GGGCUGgGUGuu -5'
24078 3' -53.7 NC_005262.1 + 30926 0.67 0.760044
Target:  5'- cGACGCGGCgaacGCUCGGCgCCGCAc -3'
miRNA:   3'- cUUGCGCUGaaguUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 13509 0.67 0.739093
Target:  5'- -cGCGCGGCcgUCAcggGCUCGGCCgGCGc -3'
miRNA:   3'- cuUGCGCUGa-AGU---UGGGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 40380 0.67 0.749629
Target:  5'- uGACGCGGC-UCAugCUG-CCCGCc- -3'
miRNA:   3'- cUUGCGCUGaAGUugGGCuGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 39199 0.67 0.728446
Target:  5'- gGGAUGCcggcaACUUCGAUCCGGCCaGCAAg -3'
miRNA:   3'- -CUUGCGc----UGAAGUUGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 18878 0.67 0.749629
Target:  5'- gGAGCaGCGcCUUgcgccgcaucCAGuCCCGACCCACGg -3'
miRNA:   3'- -CUUG-CGCuGAA----------GUU-GGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 22747 0.67 0.749629
Target:  5'- aGGCGCGAU---GACCaCGACCCAgAAa -3'
miRNA:   3'- cUUGCGCUGaagUUGG-GCUGGGUgUU- -5'
24078 3' -53.7 NC_005262.1 + 8154 0.66 0.809882
Target:  5'- cGGACGCGGCcacgagcgcgCGGCCCGGCUucuugcugCGCAGg -3'
miRNA:   3'- -CUUGCGCUGaa--------GUUGGGCUGG--------GUGUU- -5'
24078 3' -53.7 NC_005262.1 + 3140 0.66 0.828564
Target:  5'- cGAGCGCGAUga-GugCUuGCCCGCGGu -3'
miRNA:   3'- -CUUGCGCUGaagUugGGcUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 47195 0.66 0.828564
Target:  5'- aAACGCGGCUgcuUCGccGCCuCGACCagCACAc -3'
miRNA:   3'- cUUGCGCUGA---AGU--UGG-GCUGG--GUGUu -5'
24078 3' -53.7 NC_005262.1 + 55013 0.66 0.819323
Target:  5'- cGAGCGgGACUcgcgaucgaUCAAgCCGGuguCCCACGc -3'
miRNA:   3'- -CUUGCgCUGA---------AGUUgGGCU---GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 47343 0.66 0.819323
Target:  5'- --gUGCGAUUUCGACUCGuuucuuuUCCACAGu -3'
miRNA:   3'- cuuGCGCUGAAGUUGGGCu------GGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 62214 0.66 0.817451
Target:  5'- cGAACGCGACgaaaucuugcacUCGAUUCGAgCCUACGc -3'
miRNA:   3'- -CUUGCGCUGa-----------AGUUGGGCU-GGGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.