miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 53738 1.07 0.002283
Target:  5'- cGAACGCGACUUCAACCCGACCCACAAg -3'
miRNA:   3'- -CUUGCGCUGAAGUUGGGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 40650 0.77 0.256596
Target:  5'- cGGGCaCGGCgucagCGACCCGACCCACGc -3'
miRNA:   3'- -CUUGcGCUGaa---GUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 25211 0.73 0.408401
Target:  5'- cGAACGCGcacgccaaagcauGCUUCuuucAUCCGGCCCGCGg -3'
miRNA:   3'- -CUUGCGC-------------UGAAGu---UGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 51817 0.73 0.40934
Target:  5'- cGGCGaCGACUUCAGCgCGGCCgACGu -3'
miRNA:   3'- cUUGC-GCUGAAGUUGgGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 35787 0.71 0.498967
Target:  5'- cGAGCGUucGACUUCAGCUCGAUaucgaCGCGAa -3'
miRNA:   3'- -CUUGCG--CUGAAGUUGGGCUGg----GUGUU- -5'
24078 3' -53.7 NC_005262.1 + 57018 0.71 0.498967
Target:  5'- cGGGCGCGAuCUUCAACCgcuucaaggagcUGGCCgGCAAg -3'
miRNA:   3'- -CUUGCGCU-GAAGUUGG------------GCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 20339 0.71 0.498967
Target:  5'- ---aGCGGC-UCGACUCGAUCCGCAc -3'
miRNA:   3'- cuugCGCUGaAGUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 53342 0.71 0.530771
Target:  5'- --uCGCGGCUUCcGCCCGGCUUGCc- -3'
miRNA:   3'- cuuGCGCUGAAGuUGGGCUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 58658 0.7 0.552379
Target:  5'- -cGCGCGAgUUCuacgaucaAGCCCGAgCCCGCGu -3'
miRNA:   3'- cuUGCGCUgAAG--------UUGGGCU-GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 29057 0.7 0.596302
Target:  5'- cGACGCgcaccGugUUCGGCUCGACCUGCGu -3'
miRNA:   3'- cUUGCG-----CugAAGUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 23066 0.7 0.596302
Target:  5'- cGACGCGAUaccgAACCCG-CCCGCAGg -3'
miRNA:   3'- cUUGCGCUGaag-UUGGGCuGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 29772 0.7 0.607382
Target:  5'- cGACGCGGCgcacgaugCGGCCCGGCgUCACGc -3'
miRNA:   3'- cUUGCGCUGaa------GUUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 52399 0.69 0.629599
Target:  5'- cGGCGCGGCUUCGGCgUgGAgCCGCGc -3'
miRNA:   3'- cUUGCGCUGAAGUUG-GgCUgGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 43915 0.69 0.651824
Target:  5'- cAGCGCGGCgcCAACCgCGGCCgACu- -3'
miRNA:   3'- cUUGCGCUGaaGUUGG-GCUGGgUGuu -5'
24078 3' -53.7 NC_005262.1 + 4659 0.69 0.651824
Target:  5'- -cGCGCGGCgacgCGGCCCGGCCgGu-- -3'
miRNA:   3'- cuUGCGCUGaa--GUUGGGCUGGgUguu -5'
24078 3' -53.7 NC_005262.1 + 26953 0.69 0.662914
Target:  5'- --cCGCGACcaCAuCCCGACCgACGAa -3'
miRNA:   3'- cuuGCGCUGaaGUuGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 1053 0.68 0.673975
Target:  5'- aGGCGCGA--UCGGCCCGgaGCCgACAAa -3'
miRNA:   3'- cUUGCGCUgaAGUUGGGC--UGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 63047 0.68 0.684995
Target:  5'- cGAGCGCGugUUCAcgaccguUCCGACgCAUAc -3'
miRNA:   3'- -CUUGCGCugAAGUu------GGGCUGgGUGUu -5'
24078 3' -53.7 NC_005262.1 + 41927 0.68 0.695964
Target:  5'- -uGCGCGgucgGCUUCAGCgCCGAUCCcuGCAc -3'
miRNA:   3'- cuUGCGC----UGAAGUUG-GGCUGGG--UGUu -5'
24078 3' -53.7 NC_005262.1 + 49644 0.68 0.695964
Target:  5'- cGGCGCGGCggaCAAuCCCGGCgCACGc -3'
miRNA:   3'- cUUGCGCUGaa-GUU-GGGCUGgGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.