miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 1053 0.68 0.673975
Target:  5'- aGGCGCGA--UCGGCCCGgaGCCgACAAa -3'
miRNA:   3'- cUUGCGCUgaAGUUGGGC--UGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 3140 0.66 0.828564
Target:  5'- cGAGCGCGAUga-GugCUuGCCCGCGGu -3'
miRNA:   3'- -CUUGCGCUGaagUugGGcUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 4659 0.69 0.651824
Target:  5'- -cGCGCGGCgacgCGGCCCGGCCgGu-- -3'
miRNA:   3'- cuUGCGCUGaa--GUUGGGCUGGgUguu -5'
24078 3' -53.7 NC_005262.1 + 8154 0.66 0.809882
Target:  5'- cGGACGCGGCcacgagcgcgCGGCCCGGCUucuugcugCGCAGg -3'
miRNA:   3'- -CUUGCGCUGaa--------GUUGGGCUGG--------GUGUU- -5'
24078 3' -53.7 NC_005262.1 + 12847 0.68 0.70687
Target:  5'- -uGCGuCGGCUUCAGCUcggCGGCCgGCAc -3'
miRNA:   3'- cuUGC-GCUGAAGUUGG---GCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 13509 0.67 0.739093
Target:  5'- -cGCGCGGCcgUCAcggGCUCGGCCgGCGc -3'
miRNA:   3'- cuUGCGCUGa-AGU---UGGGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 15248 0.66 0.809882
Target:  5'- cAACGUu-CUUCgGGCCCGGCCUGCAc -3'
miRNA:   3'- cUUGCGcuGAAG-UUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 18878 0.67 0.749629
Target:  5'- gGAGCaGCGcCUUgcgccgcaucCAGuCCCGACCCACGg -3'
miRNA:   3'- -CUUG-CGCuGAA----------GUU-GGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 19283 0.68 0.695964
Target:  5'- cAGCGCGGCgaUCAGgCUGGCCCAgAu -3'
miRNA:   3'- cUUGCGCUGa-AGUUgGGCUGGGUgUu -5'
24078 3' -53.7 NC_005262.1 + 20110 0.67 0.780461
Target:  5'- -cGCGCGAaUUCGGCCCGGCUUg--- -3'
miRNA:   3'- cuUGCGCUgAAGUUGGGCUGGGuguu -5'
24078 3' -53.7 NC_005262.1 + 20339 0.71 0.498967
Target:  5'- ---aGCGGC-UCGACUCGAUCCGCAc -3'
miRNA:   3'- cuugCGCUGaAGUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 21649 0.66 0.800251
Target:  5'- --cCGCGACcg-GGCCCGGCgCCGCGu -3'
miRNA:   3'- cuuGCGCUGaagUUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 22747 0.67 0.749629
Target:  5'- aGGCGCGAU---GACCaCGACCCAgAAa -3'
miRNA:   3'- cUUGCGCUGaagUUGG-GCUGGGUgUU- -5'
24078 3' -53.7 NC_005262.1 + 23066 0.7 0.596302
Target:  5'- cGACGCGAUaccgAACCCG-CCCGCAGg -3'
miRNA:   3'- cUUGCGCUGaag-UUGGGCuGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 23369 0.66 0.809882
Target:  5'- -cGCGCGGCggCGAa--GGCCCGCAAc -3'
miRNA:   3'- cuUGCGCUGaaGUUgggCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 25211 0.73 0.408401
Target:  5'- cGAACGCGcacgccaaagcauGCUUCuuucAUCCGGCCCGCGg -3'
miRNA:   3'- -CUUGCGC-------------UGAAGu---UGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 26953 0.69 0.662914
Target:  5'- --cCGCGACcaCAuCCCGACCgACGAa -3'
miRNA:   3'- cuuGCGCUGaaGUuGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 29057 0.7 0.596302
Target:  5'- cGACGCgcaccGugUUCGGCUCGACCUGCGu -3'
miRNA:   3'- cUUGCG-----CugAAGUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 29772 0.7 0.607382
Target:  5'- cGACGCGGCgcacgaugCGGCCCGGCgUCACGc -3'
miRNA:   3'- cUUGCGCUGaa------GUUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 30294 0.66 0.828564
Target:  5'- cGAGCGCG-CUgUCGACaaGGCCCAgAc -3'
miRNA:   3'- -CUUGCGCuGA-AGUUGggCUGGGUgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.