miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 30926 0.67 0.760044
Target:  5'- cGACGCGGCgaacGCUCGGCgCCGCAc -3'
miRNA:   3'- cUUGCGCUGaaguUGGGCUG-GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 35787 0.71 0.498967
Target:  5'- cGAGCGUucGACUUCAGCUCGAUaucgaCGCGAa -3'
miRNA:   3'- -CUUGCG--CUGAAGUUGGGCUGg----GUGUU- -5'
24078 3' -53.7 NC_005262.1 + 36385 0.68 0.71446
Target:  5'- uGAAUGCGGCacugaaccccgacaUUCAACCUGugCCgGCAu -3'
miRNA:   3'- -CUUGCGCUG--------------AAGUUGGGCugGG-UGUu -5'
24078 3' -53.7 NC_005262.1 + 37173 0.66 0.800251
Target:  5'- -uACGCGggcGCUUCGAUuuG-CCCGCGGg -3'
miRNA:   3'- cuUGCGC---UGAAGUUGggCuGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 39199 0.67 0.728446
Target:  5'- gGGAUGCcggcaACUUCGAUCCGGCCaGCAAg -3'
miRNA:   3'- -CUUGCGc----UGAAGUUGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 40380 0.67 0.749629
Target:  5'- uGACGCGGC-UCAugCUG-CCCGCc- -3'
miRNA:   3'- cUUGCGCUGaAGUugGGCuGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 40650 0.77 0.256596
Target:  5'- cGGGCaCGGCgucagCGACCCGACCCACGc -3'
miRNA:   3'- -CUUGcGCUGaa---GUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 41927 0.68 0.695964
Target:  5'- -uGCGCGgucgGCUUCAGCgCCGAUCCcuGCAc -3'
miRNA:   3'- cuUGCGC----UGAAGUUG-GGCUGGG--UGUu -5'
24078 3' -53.7 NC_005262.1 + 43915 0.69 0.651824
Target:  5'- cAGCGCGGCgcCAACCgCGGCCgACu- -3'
miRNA:   3'- cUUGCGCUGaaGUUGG-GCUGGgUGuu -5'
24078 3' -53.7 NC_005262.1 + 47195 0.66 0.828564
Target:  5'- aAACGCGGCUgcuUCGccGCCuCGACCagCACAc -3'
miRNA:   3'- cUUGCGCUGA---AGU--UGG-GCUGG--GUGUu -5'
24078 3' -53.7 NC_005262.1 + 47343 0.66 0.819323
Target:  5'- --gUGCGAUUUCGACUCGuuucuuuUCCACAGu -3'
miRNA:   3'- cuuGCGCUGAAGUUGGGCu------GGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 48496 0.66 0.828564
Target:  5'- cGGCGCGACggcagccgCAgguaacagcgcGCUCGACCUGCAAu -3'
miRNA:   3'- cUUGCGCUGaa------GU-----------UGGGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 49644 0.68 0.695964
Target:  5'- cGGCGCGGCggaCAAuCCCGGCgCACGc -3'
miRNA:   3'- cUUGCGCUGaa-GUU-GGGCUGgGUGUu -5'
24078 3' -53.7 NC_005262.1 + 51817 0.73 0.40934
Target:  5'- cGGCGaCGACUUCAGCgCGGCCgACGu -3'
miRNA:   3'- cUUGC-GCUGAAGUUGgGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 52399 0.69 0.629599
Target:  5'- cGGCGCGGCUUCGGCgUgGAgCCGCGc -3'
miRNA:   3'- cUUGCGCUGAAGUUG-GgCUgGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 52813 0.67 0.770325
Target:  5'- cGAGCGCGACcggCGuuCCCGGCgCGCc- -3'
miRNA:   3'- -CUUGCGCUGaa-GUu-GGGCUGgGUGuu -5'
24078 3' -53.7 NC_005262.1 + 53156 0.68 0.70687
Target:  5'- cGACGCGGCgaucggCAACCCG-CCCuucGCGu -3'
miRNA:   3'- cUUGCGCUGaa----GUUGGGCuGGG---UGUu -5'
24078 3' -53.7 NC_005262.1 + 53342 0.71 0.530771
Target:  5'- --uCGCGGCUUCcGCCCGGCUUGCc- -3'
miRNA:   3'- cuuGCGCUGAAGuUGGGCUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 53738 1.07 0.002283
Target:  5'- cGAACGCGACUUCAACCCGACCCACAAg -3'
miRNA:   3'- -CUUGCGCUGAAGUUGGGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 55013 0.66 0.819323
Target:  5'- cGAGCGgGACUcgcgaucgaUCAAgCCGGuguCCCACGc -3'
miRNA:   3'- -CUUGCgCUGA---------AGUUgGGCU---GGGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.