miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 63047 0.68 0.684995
Target:  5'- cGAGCGCGugUUCAcgaccguUCCGACgCAUAc -3'
miRNA:   3'- -CUUGCGCugAAGUu------GGGCUGgGUGUu -5'
24078 3' -53.7 NC_005262.1 + 62214 0.66 0.817451
Target:  5'- cGAACGCGACgaaaucuugcacUCGAUUCGAgCCUACGc -3'
miRNA:   3'- -CUUGCGCUGa-----------AGUUGGGCU-GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 61583 0.66 0.809882
Target:  5'- ---aGCGGCUUCGACgCGAUgugCCGCGc -3'
miRNA:   3'- cuugCGCUGAAGUUGgGCUG---GGUGUu -5'
24078 3' -53.7 NC_005262.1 + 60528 0.68 0.70687
Target:  5'- aGAGCGUGACggUCGACuUCGACC-GCAAg -3'
miRNA:   3'- -CUUGCGCUGa-AGUUG-GGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 59795 0.66 0.809882
Target:  5'- cAACGCGuuCcUCGaggGCaCCGGCCCGCAGg -3'
miRNA:   3'- cUUGCGCu-GaAGU---UG-GGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 59453 0.67 0.780461
Target:  5'- cGAuCGCGACggcCGAUggaCGGCCCGCGAg -3'
miRNA:   3'- -CUuGCGCUGaa-GUUGg--GCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 59167 0.66 0.809882
Target:  5'- aGGACGCGAagaagCAGCUCacgGGCCCGCu- -3'
miRNA:   3'- -CUUGCGCUgaa--GUUGGG---CUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 58906 0.66 0.828564
Target:  5'- -uGCGCGAUcaggccggCGGCCCGACCgAUg- -3'
miRNA:   3'- cuUGCGCUGaa------GUUGGGCUGGgUGuu -5'
24078 3' -53.7 NC_005262.1 + 58658 0.7 0.552379
Target:  5'- -cGCGCGAgUUCuacgaucaAGCCCGAgCCCGCGu -3'
miRNA:   3'- cuUGCGCUgAAG--------UUGGGCU-GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 57018 0.71 0.498967
Target:  5'- cGGGCGCGAuCUUCAACCgcuucaaggagcUGGCCgGCAAg -3'
miRNA:   3'- -CUUGCGCU-GAAGUUGG------------GCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 56114 0.66 0.819323
Target:  5'- -cAUGCGuuucgUCGACCCGACCgCGCc- -3'
miRNA:   3'- cuUGCGCuga--AGUUGGGCUGG-GUGuu -5'
24078 3' -53.7 NC_005262.1 + 55013 0.66 0.819323
Target:  5'- cGAGCGgGACUcgcgaucgaUCAAgCCGGuguCCCACGc -3'
miRNA:   3'- -CUUGCgCUGA---------AGUUgGGCU---GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 53738 1.07 0.002283
Target:  5'- cGAACGCGACUUCAACCCGACCCACAAg -3'
miRNA:   3'- -CUUGCGCUGAAGUUGGGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 53342 0.71 0.530771
Target:  5'- --uCGCGGCUUCcGCCCGGCUUGCc- -3'
miRNA:   3'- cuuGCGCUGAAGuUGGGCUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 53156 0.68 0.70687
Target:  5'- cGACGCGGCgaucggCAACCCG-CCCuucGCGu -3'
miRNA:   3'- cUUGCGCUGaa----GUUGGGCuGGG---UGUu -5'
24078 3' -53.7 NC_005262.1 + 52813 0.67 0.770325
Target:  5'- cGAGCGCGACcggCGuuCCCGGCgCGCc- -3'
miRNA:   3'- -CUUGCGCUGaa-GUu-GGGCUGgGUGuu -5'
24078 3' -53.7 NC_005262.1 + 52399 0.69 0.629599
Target:  5'- cGGCGCGGCUUCGGCgUgGAgCCGCGc -3'
miRNA:   3'- cUUGCGCUGAAGUUG-GgCUgGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 51817 0.73 0.40934
Target:  5'- cGGCGaCGACUUCAGCgCGGCCgACGu -3'
miRNA:   3'- cUUGC-GCUGAAGUUGgGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 49644 0.68 0.695964
Target:  5'- cGGCGCGGCggaCAAuCCCGGCgCACGc -3'
miRNA:   3'- cUUGCGCUGaa-GUU-GGGCUGgGUGUu -5'
24078 3' -53.7 NC_005262.1 + 48496 0.66 0.828564
Target:  5'- cGGCGCGACggcagccgCAgguaacagcgcGCUCGACCUGCAAu -3'
miRNA:   3'- cUUGCGCUGaa------GU-----------UGGGCUGGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.