miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 56114 0.66 0.819323
Target:  5'- -cAUGCGuuucgUCGACCCGACCgCGCc- -3'
miRNA:   3'- cuUGCGCuga--AGUUGGGCUGG-GUGuu -5'
24078 3' -53.7 NC_005262.1 + 36385 0.68 0.71446
Target:  5'- uGAAUGCGGCacugaaccccgacaUUCAACCUGugCCgGCAu -3'
miRNA:   3'- -CUUGCGCUG--------------AAGUUGGGCugGG-UGUu -5'
24078 3' -53.7 NC_005262.1 + 39199 0.67 0.728446
Target:  5'- gGGAUGCcggcaACUUCGAUCCGGCCaGCAAg -3'
miRNA:   3'- -CUUGCGc----UGAAGUUGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 18878 0.67 0.749629
Target:  5'- gGAGCaGCGcCUUgcgccgcaucCAGuCCCGACCCACGg -3'
miRNA:   3'- -CUUG-CGCuGAA----------GUU-GGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 22747 0.67 0.749629
Target:  5'- aGGCGCGAU---GACCaCGACCCAgAAa -3'
miRNA:   3'- cUUGCGCUGaagUUGG-GCUGGGUgUU- -5'
24078 3' -53.7 NC_005262.1 + 15248 0.66 0.809882
Target:  5'- cAACGUu-CUUCgGGCCCGGCCUGCAc -3'
miRNA:   3'- cUUGCGcuGAAG-UUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 23369 0.66 0.809882
Target:  5'- -cGCGCGGCggCGAa--GGCCCGCAAc -3'
miRNA:   3'- cuUGCGCUGaaGUUgggCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 59167 0.66 0.809882
Target:  5'- aGGACGCGAagaagCAGCUCacgGGCCCGCu- -3'
miRNA:   3'- -CUUGCGCUgaa--GUUGGG---CUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 59795 0.66 0.809882
Target:  5'- cAACGCGuuCcUCGaggGCaCCGGCCCGCAGg -3'
miRNA:   3'- cUUGCGCu-GaAGU---UG-GGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 53156 0.68 0.70687
Target:  5'- cGACGCGGCgaucggCAACCCG-CCCuucGCGu -3'
miRNA:   3'- cUUGCGCUGaa----GUUGGGCuGGG---UGUu -5'
24078 3' -53.7 NC_005262.1 + 60528 0.68 0.70687
Target:  5'- aGAGCGUGACggUCGACuUCGACC-GCAAg -3'
miRNA:   3'- -CUUGCGCUGa-AGUUG-GGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 1053 0.68 0.673975
Target:  5'- aGGCGCGA--UCGGCCCGgaGCCgACAAa -3'
miRNA:   3'- cUUGCGCUgaAGUUGGGC--UGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 40650 0.77 0.256596
Target:  5'- cGGGCaCGGCgucagCGACCCGACCCACGc -3'
miRNA:   3'- -CUUGcGCUGaa---GUUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 51817 0.73 0.40934
Target:  5'- cGGCGaCGACUUCAGCgCGGCCgACGu -3'
miRNA:   3'- cUUGC-GCUGAAGUUGgGCUGGgUGUu -5'
24078 3' -53.7 NC_005262.1 + 35787 0.71 0.498967
Target:  5'- cGAGCGUucGACUUCAGCUCGAUaucgaCGCGAa -3'
miRNA:   3'- -CUUGCG--CUGAAGUUGGGCUGg----GUGUU- -5'
24078 3' -53.7 NC_005262.1 + 57018 0.71 0.498967
Target:  5'- cGGGCGCGAuCUUCAACCgcuucaaggagcUGGCCgGCAAg -3'
miRNA:   3'- -CUUGCGCU-GAAGUUGG------------GCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 58658 0.7 0.552379
Target:  5'- -cGCGCGAgUUCuacgaucaAGCCCGAgCCCGCGu -3'
miRNA:   3'- cuUGCGCUgAAG--------UUGGGCU-GGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 23066 0.7 0.596302
Target:  5'- cGACGCGAUaccgAACCCG-CCCGCAGg -3'
miRNA:   3'- cUUGCGCUGaag-UUGGGCuGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 43915 0.69 0.651824
Target:  5'- cAGCGCGGCgcCAACCgCGGCCgACu- -3'
miRNA:   3'- cUUGCGCUGaaGUUGG-GCUGGgUGuu -5'
24078 3' -53.7 NC_005262.1 + 26953 0.69 0.662914
Target:  5'- --cCGCGACcaCAuCCCGACCgACGAa -3'
miRNA:   3'- cuuGCGCUGaaGUuGGGCUGGgUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.