miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 3' -53.7 NC_005262.1 + 58906 0.66 0.828564
Target:  5'- -uGCGCGAUcaggccggCGGCCCGACCgAUg- -3'
miRNA:   3'- cuUGCGCUGaa------GUUGGGCUGGgUGuu -5'
24078 3' -53.7 NC_005262.1 + 48496 0.66 0.828564
Target:  5'- cGGCGCGACggcagccgCAgguaacagcgcGCUCGACCUGCAAu -3'
miRNA:   3'- cUUGCGCUGaa------GU-----------UGGGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 56114 0.66 0.819323
Target:  5'- -cAUGCGuuucgUCGACCCGACCgCGCc- -3'
miRNA:   3'- cuUGCGCuga--AGUUGGGCUGG-GUGuu -5'
24078 3' -53.7 NC_005262.1 + 59167 0.66 0.809882
Target:  5'- aGGACGCGAagaagCAGCUCacgGGCCCGCu- -3'
miRNA:   3'- -CUUGCGCUgaa--GUUGGG---CUGGGUGuu -5'
24078 3' -53.7 NC_005262.1 + 59795 0.66 0.809882
Target:  5'- cAACGCGuuCcUCGaggGCaCCGGCCCGCAGg -3'
miRNA:   3'- cUUGCGCu-GaAGU---UG-GGCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 23369 0.66 0.809882
Target:  5'- -cGCGCGGCggCGAa--GGCCCGCAAc -3'
miRNA:   3'- cuUGCGCUGaaGUUgggCUGGGUGUU- -5'
24078 3' -53.7 NC_005262.1 + 15248 0.66 0.809882
Target:  5'- cAACGUu-CUUCgGGCCCGGCCUGCAc -3'
miRNA:   3'- cUUGCGcuGAAG-UUGGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 22747 0.67 0.749629
Target:  5'- aGGCGCGAU---GACCaCGACCCAgAAa -3'
miRNA:   3'- cUUGCGCUGaagUUGG-GCUGGGUgUU- -5'
24078 3' -53.7 NC_005262.1 + 18878 0.67 0.749629
Target:  5'- gGAGCaGCGcCUUgcgccgcaucCAGuCCCGACCCACGg -3'
miRNA:   3'- -CUUG-CGCuGAA----------GUU-GGGCUGGGUGUu -5'
24078 3' -53.7 NC_005262.1 + 39199 0.67 0.728446
Target:  5'- gGGAUGCcggcaACUUCGAUCCGGCCaGCAAg -3'
miRNA:   3'- -CUUGCGc----UGAAGUUGGGCUGGgUGUU- -5'
24078 3' -53.7 NC_005262.1 + 53738 1.07 0.002283
Target:  5'- cGAACGCGACUUCAACCCGACCCACAAg -3'
miRNA:   3'- -CUUGCGCUGAAGUUGGGCUGGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.