miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 7620 0.66 0.821797
Target:  5'- cGCUuaccggACGUUGGCcgaaugucGAcGCCGGCGGCg -3'
miRNA:   3'- cCGAca----UGCAGCCG--------CUaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 53564 0.66 0.81997
Target:  5'- ---gGUGC-UCGGCGcgcacgcgcugACCGGCAGCa -3'
miRNA:   3'- ccgaCAUGcAGCCGCua---------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 47529 0.66 0.818135
Target:  5'- cGCUGcccgaaaucaucgGCGUCGGCcaGUACaaaaaGGCGACg -3'
miRNA:   3'- cCGACa------------UGCAGCCGc-UAUGg----CCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 51664 0.66 0.812584
Target:  5'- uGGCUcuccaGCG-CGGCGAUcugcucgcgcGCaCGGCGGCg -3'
miRNA:   3'- -CCGAca---UGCaGCCGCUA----------UG-GCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 17042 0.66 0.812584
Target:  5'- cGcCUGUACGacCGGCG-UGgCGGCGAUc -3'
miRNA:   3'- cC-GACAUGCa-GCCGCuAUgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 35587 0.66 0.812584
Target:  5'- uGUUGUGC-UCGGCGcggGCuCGGCAc- -3'
miRNA:   3'- cCGACAUGcAGCCGCua-UG-GCCGUug -5'
24078 5' -54.4 NC_005262.1 + 32169 0.66 0.812584
Target:  5'- cGCcGUAgGUCGGCu-UGCCGcGCAGg -3'
miRNA:   3'- cCGaCAUgCAGCCGcuAUGGC-CGUUg -5'
24078 5' -54.4 NC_005262.1 + 12422 0.66 0.803185
Target:  5'- cGGCcuUGgccgGCGUCGcggacggcGCGGUGCCGaGCuGCa -3'
miRNA:   3'- -CCG--ACa---UGCAGC--------CGCUAUGGC-CGuUG- -5'
24078 5' -54.4 NC_005262.1 + 35253 0.66 0.803185
Target:  5'- cGGCUGgGCGccccCGGCGAa--CGGCAc- -3'
miRNA:   3'- -CCGACaUGCa---GCCGCUaugGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 780 0.66 0.803185
Target:  5'- aGGUUcggGCGU-GGCuugACCGGCAGCa -3'
miRNA:   3'- -CCGAca-UGCAgCCGcuaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 30416 0.66 0.803185
Target:  5'- aGCUGggcgGCGUCGaCGAUcacgGCCGGCn-- -3'
miRNA:   3'- cCGACa---UGCAGCcGCUA----UGGCCGuug -5'
24078 5' -54.4 NC_005262.1 + 48490 0.66 0.79361
Target:  5'- cGGCcGcccgcccaUGCG-CGGCGAaucgacgACUGGCAGCa -3'
miRNA:   3'- -CCGaC--------AUGCaGCCGCUa------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 53976 0.66 0.79361
Target:  5'- cGCUcaagACGcUCGGCGAUGCCuaCGACg -3'
miRNA:   3'- cCGAca--UGC-AGCCGCUAUGGccGUUG- -5'
24078 5' -54.4 NC_005262.1 + 24859 0.66 0.79361
Target:  5'- uGCgccaGUGC-UCGGCGAUgugcauccGCCGGCGc- -3'
miRNA:   3'- cCGa---CAUGcAGCCGCUA--------UGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 32737 0.66 0.783869
Target:  5'- cGGCgagcGCGUCGGCG---UCGGuCAGCa -3'
miRNA:   3'- -CCGaca-UGCAGCCGCuauGGCC-GUUG- -5'
24078 5' -54.4 NC_005262.1 + 33895 0.66 0.783869
Target:  5'- ---cGUGCGUCGGcCGGcggcccgAUCGGUAGCg -3'
miRNA:   3'- ccgaCAUGCAGCC-GCUa------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 51097 0.66 0.783869
Target:  5'- aGGCaaggACGUCaaGGCGAUcgugcucgacgcGCCGGuCGACa -3'
miRNA:   3'- -CCGaca-UGCAG--CCGCUA------------UGGCC-GUUG- -5'
24078 5' -54.4 NC_005262.1 + 55918 0.66 0.783869
Target:  5'- cGCaGUACGUcgaccgucCGGCGAUcgagGgCGGCGGCc -3'
miRNA:   3'- cCGaCAUGCA--------GCCGCUA----UgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 42271 0.67 0.773974
Target:  5'- cGGCg--ACGagCGGCacgGGcACCGGCGACg -3'
miRNA:   3'- -CCGacaUGCa-GCCG---CUaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 5177 0.67 0.763935
Target:  5'- cGGCcg-GCGUCgcgggcgcgGGCGcgGCCGGCGc- -3'
miRNA:   3'- -CCGacaUGCAG---------CCGCuaUGGCCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.