miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24078 5' -54.4 NC_005262.1 + 61229 0.67 0.743467
Target:  5'- cGCUGaaaUACGUgUGGCGcaccuacACCGGCGGCc -3'
miRNA:   3'- cCGAC---AUGCA-GCCGCua-----UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 38700 0.67 0.753762
Target:  5'- uGCUGUGCugccCGGCGAa---GGCAGCa -3'
miRNA:   3'- cCGACAUGca--GCCGCUauggCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 25916 0.67 0.763935
Target:  5'- cGCgcaugGUACGUCGccacgcGCGAcgccgacuuuCCGGCAACg -3'
miRNA:   3'- cCGa----CAUGCAGC------CGCUau--------GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 42271 0.67 0.773974
Target:  5'- cGGCg--ACGagCGGCacgGGcACCGGCGACg -3'
miRNA:   3'- -CCGacaUGCa-GCCG---CUaUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 31942 0.67 0.743467
Target:  5'- uGCUGUACGgCGGUG----UGGCGACg -3'
miRNA:   3'- cCGACAUGCaGCCGCuaugGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 27374 0.67 0.733062
Target:  5'- aGGCcGU-CGUCGGCGccuccgcgaacGUGgacuUCGGCGACg -3'
miRNA:   3'- -CCGaCAuGCAGCCGC-----------UAU----GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 46905 0.67 0.763935
Target:  5'- gGGCgGUGCGgugUGGUGcgGCCcGGCGcGCg -3'
miRNA:   3'- -CCGaCAUGCa--GCCGCuaUGG-CCGU-UG- -5'
24078 5' -54.4 NC_005262.1 + 33709 0.67 0.753762
Target:  5'- cGGCgUGU-CGUcgcccuucuugcCGGCGucgucgucGCCGGCAGCa -3'
miRNA:   3'- -CCG-ACAuGCA------------GCCGCua------UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 33641 0.67 0.733062
Target:  5'- aGCUucGCGUCGGCauccGCCGGCGc- -3'
miRNA:   3'- cCGAcaUGCAGCCGcua-UGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 5177 0.67 0.763935
Target:  5'- cGGCcg-GCGUCgcgggcgcgGGCGcgGCCGGCGc- -3'
miRNA:   3'- -CCGacaUGCAG---------CCGCuaUGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 12842 0.68 0.722558
Target:  5'- cGGCc-UGCGUCGGCuucagcucgGcgGCCGGCAc- -3'
miRNA:   3'- -CCGacAUGCAGCCG---------CuaUGGCCGUug -5'
24078 5' -54.4 NC_005262.1 + 22103 0.68 0.722558
Target:  5'- uGGCUGcggcauagAUGcCGaugcCGGUGCCGGCGGCg -3'
miRNA:   3'- -CCGACa-------UGCaGCc---GCUAUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 6575 0.68 0.711965
Target:  5'- cGGCgc-GCGUC-GCGAUGCCGcCGACc -3'
miRNA:   3'- -CCGacaUGCAGcCGCUAUGGCcGUUG- -5'
24078 5' -54.4 NC_005262.1 + 62657 0.68 0.711965
Target:  5'- uGCga-GCGUCGGgGGUGgguuuaguccgcCCGGCGGCg -3'
miRNA:   3'- cCGacaUGCAGCCgCUAU------------GGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 49211 0.68 0.668931
Target:  5'- uGCUGgcCGagGGCGGccUCGGCGGCg -3'
miRNA:   3'- cCGACauGCagCCGCUauGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 51427 0.68 0.701294
Target:  5'- cGGCgcgcGCGagGGCGAUACCGucaCGACg -3'
miRNA:   3'- -CCGaca-UGCagCCGCUAUGGCc--GUUG- -5'
24078 5' -54.4 NC_005262.1 + 13499 0.68 0.701294
Target:  5'- cGCUG-GCGaaGGCGAaGgCGGCGGCa -3'
miRNA:   3'- cCGACaUGCagCCGCUaUgGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 40749 0.68 0.711965
Target:  5'- cGGCgGcGCGUuccaaaucaaCGGCuAUGCUGGCGGCa -3'
miRNA:   3'- -CCGaCaUGCA----------GCCGcUAUGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 27295 0.68 0.722558
Target:  5'- --aUGaGCG-CGGCGAgcaagAUCGGCAGCa -3'
miRNA:   3'- ccgACaUGCaGCCGCUa----UGGCCGUUG- -5'
24078 5' -54.4 NC_005262.1 + 11642 0.68 0.719388
Target:  5'- cGGCUcGgcgGCGcCGGCGucgcgcugcacgcugGCCGGCAGa -3'
miRNA:   3'- -CCGA-Ca--UGCaGCCGCua-------------UGGCCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.